Coexpression cluster: Cluster_384 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0048793 pronephros development 100.0% (2/2) 10.8 0.0 2e-05
GO:0060212 negative regulation of nuclear-transcribed mRNA poly(A) tail shortening 100.0% (2/2) 10.86 0.0 2.5e-05
GO:1900152 negative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 100.0% (2/2) 10.86 0.0 2.5e-05
GO:0010501 RNA secondary structure unwinding 100.0% (2/2) 11.35 0.0 3.7e-05
GO:0000380 alternative mRNA splicing, via spliceosome 100.0% (2/2) 10.04 1e-06 4.7e-05
GO:1900151 regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 100.0% (2/2) 9.8 1e-06 4.7e-05
GO:0060211 regulation of nuclear-transcribed mRNA poly(A) tail shortening 100.0% (2/2) 9.83 1e-06 5.3e-05
GO:0022008 neurogenesis 100.0% (2/2) 9.21 3e-06 6.8e-05
GO:0048255 mRNA stabilization 100.0% (2/2) 9.21 3e-06 6.8e-05
GO:0006406 mRNA export from nucleus 100.0% (2/2) 8.97 4e-06 7.5e-05
GO:0050685 positive regulation of mRNA processing 100.0% (2/2) 9.06 3e-06 7.7e-05
GO:1902373 negative regulation of mRNA catabolic process 100.0% (2/2) 9.01 4e-06 7.7e-05
GO:0001822 kidney development 100.0% (2/2) 8.85 5e-06 7.8e-05
GO:0033120 positive regulation of RNA splicing 100.0% (2/2) 8.85 5e-06 7.8e-05
GO:0007369 gastrulation 100.0% (2/2) 9.32 2e-06 8e-05
GO:0048026 positive regulation of mRNA splicing, via spliceosome 100.0% (2/2) 9.23 3e-06 8.1e-05
GO:1902369 negative regulation of RNA catabolic process 100.0% (2/2) 8.54 7e-06 8.7e-05
GO:1903312 negative regulation of mRNA metabolic process 100.0% (2/2) 8.54 7e-06 8.7e-05
GO:0043489 RNA stabilization 100.0% (2/2) 8.68 6e-06 9.2e-05
GO:0043022 ribosome binding 100.0% (2/2) 8.55 7e-06 9.4e-05
GO:0006405 RNA export from nucleus 100.0% (2/2) 8.63 6e-06 9.5e-05
GO:0032508 DNA duplex unwinding 100.0% (2/2) 8.57 7e-06 9.7e-05
GO:0032392 DNA geometric change 100.0% (2/2) 8.37 9e-06 0.000105
GO:0003730 mRNA 3'-UTR binding 100.0% (2/2) 8.31 1e-05 0.00011
GO:0071103 DNA conformation change 100.0% (2/2) 8.18 1.2e-05 0.000127
GO:0010043 response to zinc ion 100.0% (2/2) 8.15 1.2e-05 0.000128
GO:0051028 mRNA transport 100.0% (2/2) 8.04 1.4e-05 0.000138
GO:0051168 nuclear export 100.0% (2/2) 8.04 1.4e-05 0.000138
GO:0016554 cytidine to uridine editing 100.0% (2/2) 7.95 1.6e-05 0.00015
GO:0016553 base conversion or substitution editing 100.0% (2/2) 7.87 1.8e-05 0.000162
GO:0051236 establishment of RNA localization 100.0% (2/2) 7.7 2.3e-05 0.000181
GO:0050657 nucleic acid transport 100.0% (2/2) 7.71 2.3e-05 0.000185
GO:0050658 RNA transport 100.0% (2/2) 7.71 2.3e-05 0.000185
GO:0000398 mRNA splicing, via spliceosome 100.0% (2/2) 7.66 2.4e-05 0.000186
GO:0048024 regulation of mRNA splicing, via spliceosome 100.0% (2/2) 7.72 2.3e-05 0.000195
GO:0043488 regulation of mRNA stability 100.0% (2/2) 7.58 2.7e-05 0.000202
GO:0080156 mitochondrial mRNA modification 100.0% (2/2) 7.55 2.8e-05 0.000204
GO:0031330 negative regulation of cellular catabolic process 100.0% (2/2) 7.31 3.9e-05 0.000207
GO:0043484 regulation of RNA splicing 100.0% (2/2) 7.31 3.9e-05 0.000207
GO:0003697 single-stranded DNA binding 100.0% (2/2) 7.49 3.1e-05 0.000211
GO:1903313 positive regulation of mRNA metabolic process 100.0% (2/2) 7.51 3e-05 0.000212
GO:0050684 regulation of mRNA processing 100.0% (2/2) 7.38 3.6e-05 0.000213
GO:0061013 regulation of mRNA catabolic process 100.0% (2/2) 7.38 3.6e-05 0.000213
GO:0016477 cell migration 100.0% (2/2) 7.47 3.2e-05 0.000213
GO:0000375 RNA splicing, via transesterification reactions 100.0% (2/2) 7.32 3.9e-05 0.000214
GO:0045727 positive regulation of translation 100.0% (2/2) 7.43 3.4e-05 0.000214
GO:0051169 nuclear transport 100.0% (2/2) 7.33 3.8e-05 0.000215
GO:0006913 nucleocytoplasmic transport 100.0% (2/2) 7.34 3.8e-05 0.000216
GO:0043021 ribonucleoprotein complex binding 100.0% (2/2) 7.4 3.5e-05 0.000217
GO:0005507 copper ion binding 100.0% (2/2) 7.27 4.2e-05 0.000217
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 100.0% (2/2) 7.35 3.7e-05 0.000217
GO:0043487 regulation of RNA stability 100.0% (2/2) 7.43 3.3e-05 0.000218
GO:0034250 positive regulation of cellular amide metabolic process 100.0% (2/2) 7.24 4.3e-05 0.000219
GO:0048870 cell motility 100.0% (2/2) 7.22 4.5e-05 0.000222
GO:0016556 mRNA modification 100.0% (2/2) 7.13 5.1e-05 0.000247
GO:1900864 mitochondrial RNA modification 100.0% (2/2) 7.1 5.3e-05 0.000252
GO:0010228 vegetative to reproductive phase transition of meristem 100.0% (2/2) 7.0 6.1e-05 0.000287
GO:0005681 spliceosomal complex 100.0% (2/2) 6.96 6.4e-05 0.000295
GO:0009792 embryo development ending in birth or egg hatching 100.0% (2/2) 6.95 6.5e-05 0.000296
GO:0015931 nucleobase-containing compound transport 100.0% (2/2) 6.93 6.7e-05 0.000298
GO:0009895 negative regulation of catabolic process 100.0% (2/2) 6.9 7e-05 0.000307
GO:0048598 embryonic morphogenesis 100.0% (2/2) 6.84 7.6e-05 0.000328
GO:0008380 RNA splicing 100.0% (2/2) 6.73 8.8e-05 0.000374
GO:0000959 mitochondrial RNA metabolic process 100.0% (2/2) 6.61 0.000104 0.000437
GO:1903311 regulation of mRNA metabolic process 100.0% (2/2) 6.58 0.000109 0.00045
GO:0051276 chromosome organization 100.0% (2/2) 6.28 0.000166 0.000674
GO:0006397 mRNA processing 100.0% (2/2) 6.2 0.000185 0.00074
GO:0005777 peroxisome 100.0% (2/2) 6.16 0.000195 0.00077
GO:0009451 RNA modification 100.0% (2/2) 5.99 0.000248 0.000963
GO:0006417 regulation of translation 100.0% (2/2) 5.96 0.000257 0.00097
GO:0007623 circadian rhythm 100.0% (2/2) 5.97 0.000255 0.000977
GO:0042579 microbody 100.0% (2/2) 5.9 0.000281 0.001047
GO:0010119 regulation of stomatal movement 100.0% (2/2) 5.88 0.000288 0.001058
GO:0034248 regulation of cellular amide metabolic process 100.0% (2/2) 5.87 0.000293 0.001062
GO:0048511 rhythmic process 100.0% (2/2) 5.83 0.000308 0.001102
GO:0031329 regulation of cellular catabolic process 100.0% (2/2) 5.62 0.000413 0.001457
GO:0010608 post-transcriptional regulation of gene expression 100.0% (2/2) 5.56 0.000447 0.001556
GO:2000112 regulation of cellular macromolecule biosynthetic process 100.0% (2/2) 5.54 0.000459 0.001577
GO:0046686 response to cadmium ion 100.0% (2/2) 5.43 0.000539 0.001829
GO:0010628 positive regulation of gene expression 100.0% (2/2) 5.41 0.000553 0.001854
GO:0016071 mRNA metabolic process 100.0% (2/2) 5.32 0.000627 0.002073
GO:0009894 regulation of catabolic process 100.0% (2/2) 5.27 0.000675 0.002206
GO:0045087 innate immune response 100.0% (2/2) 5.25 0.000687 0.002218
GO:0044877 protein-containing complex binding 100.0% (2/2) 5.24 0.000703 0.002243
GO:0051247 positive regulation of protein metabolic process 100.0% (2/2) 5.2 0.000735 0.002317
GO:1990904 ribonucleoprotein complex 100.0% (2/2) 5.13 0.000814 0.00248
GO:0006955 immune response 100.0% (2/2) 5.13 0.00081 0.002495
GO:0048513 animal organ development 100.0% (2/2) 5.14 0.000801 0.002497
GO:0043023 ribosomal large subunit binding 50.0% (1/2) 9.73 0.001177 0.003543
GO:0046907 intracellular transport 100.0% (2/2) 4.85 0.001201 0.003576
GO:0051253 negative regulation of RNA metabolic process 100.0% (2/2) 4.77 0.001341 0.00395
GO:0140513 nuclear protein-containing complex 100.0% (2/2) 4.72 0.001446 0.004123
GO:0070181 small ribosomal subunit rRNA binding 50.0% (1/2) 9.45 0.001432 0.004127
GO:0009790 embryo development 100.0% (2/2) 4.73 0.001419 0.004134
GO:0046914 transition metal ion binding 100.0% (2/2) 4.67 0.001549 0.00437
GO:0045934 negative regulation of nucleobase-containing compound metabolic process 100.0% (2/2) 4.64 0.001614 0.004507
GO:0051649 establishment of localization in cell 100.0% (2/2) 4.63 0.001641 0.004534
GO:0010038 response to metal ion 100.0% (2/2) 4.57 0.001764 0.004823
GO:0009737 response to abscisic acid 100.0% (2/2) 4.53 0.001879 0.004938
GO:0003729 mRNA binding 100.0% (2/2) 4.55 0.001824 0.004939
GO:0006396 RNA processing 100.0% (2/2) 4.53 0.001868 0.004957
GO:0009507 chloroplast 100.0% (2/2) 4.53 0.001864 0.004995
GO:0009409 response to cold 100.0% (2/2) 4.51 0.001928 0.005018
GO:0009414 response to water deprivation 100.0% (2/2) 4.46 0.002077 0.005353
GO:0002376 immune system process 100.0% (2/2) 4.43 0.002143 0.00547
GO:0009651 response to salt stress 100.0% (2/2) 4.39 0.002261 0.00561
GO:0009415 response to water 100.0% (2/2) 4.4 0.002253 0.005644
GO:0030154 cell differentiation 100.0% (2/2) 4.4 0.002251 0.005691
GO:0097305 response to alcohol 100.0% (2/2) 4.36 0.002382 0.005855
GO:0071705 nitrogen compound transport 100.0% (2/2) 4.34 0.002452 0.005974
GO:0001101 response to acid chemical 100.0% (2/2) 4.31 0.002531 0.006111
GO:0005739 mitochondrion 100.0% (2/2) 4.28 0.002633 0.006243
GO:0005524 ATP binding 100.0% (2/2) 4.29 0.002614 0.006255
GO:0051254 positive regulation of RNA metabolic process 100.0% (2/2) 4.24 0.002784 0.006545
GO:0034063 stress granule assembly 50.0% (1/2) 8.47 0.002812 0.006554
GO:0051246 regulation of protein metabolic process 100.0% (2/2) 4.17 0.003072 0.006804
GO:0030554 adenyl nucleotide binding 100.0% (2/2) 4.17 0.003069 0.006855
GO:0010557 positive regulation of macromolecule biosynthetic process 100.0% (2/2) 4.18 0.003058 0.006887
GO:0032559 adenyl ribonucleotide binding 100.0% (2/2) 4.18 0.003038 0.0069
GO:0003690 double-stranded DNA binding 100.0% (2/2) 4.19 0.003018 0.006914
GO:0019899 enzyme binding 100.0% (2/2) 4.19 0.003004 0.006941
GO:0045935 positive regulation of nucleobase-containing compound metabolic process 100.0% (2/2) 4.13 0.003259 0.00716
GO:0006970 response to osmotic stress 100.0% (2/2) 4.11 0.003333 0.007261
GO:0016070 RNA metabolic process 100.0% (2/2) 4.07 0.003561 0.007398
GO:0071702 organic substance transport 100.0% (2/2) 4.07 0.003561 0.007398
GO:0051641 cellular localization 100.0% (2/2) 4.08 0.003488 0.007419
GO:0009536 plastid 100.0% (2/2) 4.08 0.003482 0.007465
GO:0035639 purine ribonucleoside triphosphate binding 100.0% (2/2) 4.09 0.003458 0.007474
GO:0030371 translation repressor activity 50.0% (1/2) 8.1 0.00363 0.007483
GO:0031324 negative regulation of cellular metabolic process 100.0% (2/2) 4.07 0.003549 0.007489
GO:0051172 negative regulation of nitrogen compound metabolic process 100.0% (2/2) 4.05 0.003662 0.007493
GO:0031328 positive regulation of cellular biosynthetic process 100.0% (2/2) 4.0 0.003911 0.007941
GO:0017076 purine nucleotide binding 100.0% (2/2) 3.97 0.004076 0.008092
GO:0009891 positive regulation of biosynthetic process 100.0% (2/2) 3.97 0.00405 0.0081
GO:0032555 purine ribonucleotide binding 100.0% (2/2) 3.98 0.004024 0.008108
GO:0009266 response to temperature stimulus 100.0% (2/2) 3.96 0.004145 0.008168
GO:0032553 ribonucleotide binding 100.0% (2/2) 3.94 0.004251 0.008256
GO:0003723 RNA binding 100.0% (2/2) 3.94 0.004221 0.008257
GO:0035196 miRNA processing 50.0% (1/2) 7.81 0.004447 0.008573
GO:0007275 multicellular organism development 100.0% (2/2) 3.89 0.004553 0.008716
GO:0097367 carbohydrate derivative binding 100.0% (2/2) 3.86 0.004756 0.009039
GO:0010605 negative regulation of macromolecule metabolic process 100.0% (2/2) 3.78 0.005292 0.009988
GO:0048869 cellular developmental process 100.0% (2/2) 3.74 0.005575 0.010448
GO:0009506 plasmodesma 100.0% (2/2) 3.68 0.006095 0.011187
GO:0006996 organelle organization 100.0% (2/2) 3.68 0.006079 0.011235
GO:0051173 positive regulation of nitrogen compound metabolic process 100.0% (2/2) 3.68 0.006051 0.011261
GO:0031490 chromatin DNA binding 50.0% (1/2) 7.34 0.006182 0.01127
GO:0005911 cell-cell junction 100.0% (2/2) 3.64 0.00641 0.011608
GO:0070161 anchoring junction 100.0% (2/2) 3.63 0.006509 0.011629
GO:0009892 negative regulation of metabolic process 100.0% (2/2) 3.63 0.006492 0.011678
GO:0090304 nucleic acid metabolic process 100.0% (2/2) 3.6 0.006801 0.012071
GO:0031325 positive regulation of cellular metabolic process 100.0% (2/2) 3.59 0.006856 0.012088
GO:0010604 positive regulation of macromolecule metabolic process 100.0% (2/2) 3.58 0.007009 0.012278
GO:0043168 anion binding 100.0% (2/2) 3.56 0.007152 0.012365
GO:0003677 DNA binding 100.0% (2/2) 3.57 0.00713 0.012408
GO:0033993 response to lipid 100.0% (2/2) 3.5 0.007806 0.013241
GO:0043228 non-membrane-bounded organelle 100.0% (2/2) 3.5 0.007797 0.01331
GO:0043232 intracellular non-membrane-bounded organelle 100.0% (2/2) 3.5 0.007797 0.01331
GO:0009653 anatomical structure morphogenesis 100.0% (2/2) 3.49 0.00792 0.013349
GO:0070918 small regulatory ncRNA processing 50.0% (1/2) 6.93 0.00817 0.013685
GO:0010494 cytoplasmic stress granule 50.0% (1/2) 6.91 0.008323 0.013854
GO:0030054 cell junction 100.0% (2/2) 3.43 0.008594 0.014217
GO:0009893 positive regulation of metabolic process 100.0% (2/2) 3.37 0.00929 0.015275
GO:0010035 response to inorganic substance 100.0% (2/2) 3.35 0.009659 0.015784
GO:0051252 regulation of RNA metabolic process 100.0% (2/2) 3.34 0.009805 0.015926
GO:0000166 nucleotide binding 100.0% (2/2) 3.3 0.010308 0.016444
GO:1901265 nucleoside phosphate binding 100.0% (2/2) 3.3 0.010308 0.016444
GO:0006139 nucleobase-containing compound metabolic process 100.0% (2/2) 3.31 0.010194 0.016458
GO:0010556 regulation of macromolecule biosynthetic process 100.0% (2/2) 3.23 0.011368 0.018027
GO:0019219 regulation of nucleobase-containing compound metabolic process 100.0% (2/2) 3.22 0.011593 0.018275
GO:0046872 metal ion binding 100.0% (2/2) 3.21 0.011675 0.018298
GO:0009725 response to hormone 100.0% (2/2) 3.16 0.0126 0.01897
GO:0036094 small molecule binding 100.0% (2/2) 3.16 0.012571 0.019034
GO:0043169 cation binding 100.0% (2/2) 3.18 0.012223 0.019046
GO:0019843 rRNA binding 50.0% (1/2) 6.32 0.012446 0.01906
GO:0006810 transport 100.0% (2/2) 3.17 0.012308 0.019067
GO:0098542 defense response to other organism 100.0% (2/2) 3.17 0.012399 0.019098
GO:0048523 negative regulation of cellular process 100.0% (2/2) 3.16 0.012542 0.019098
GO:0065008 regulation of biological quality 100.0% (2/2) 3.11 0.013322 0.019946
GO:0051234 establishment of localization 100.0% (2/2) 3.11 0.013446 0.02002
GO:0009719 response to endogenous stimulus 100.0% (2/2) 3.06 0.014412 0.021107
GO:0043412 macromolecule modification 100.0% (2/2) 3.06 0.014339 0.021114
GO:0045182 translation regulator activity 50.0% (1/2) 6.12 0.014326 0.021212
GO:0031326 regulation of cellular biosynthetic process 100.0% (2/2) 3.01 0.015348 0.022234
GO:0032991 protein-containing complex 100.0% (2/2) 3.02 0.015279 0.022254
GO:0010468 regulation of gene expression 100.0% (2/2) 2.96 0.016399 0.023502
GO:0009889 regulation of biosynthetic process 100.0% (2/2) 2.97 0.016366 0.023582
GO:0046483 heterocycle metabolic process 100.0% (2/2) 2.92 0.017336 0.024713
GO:0140694 non-membrane-bounded organelle assembly 50.0% (1/2) 5.82 0.017676 0.025065
GO:0051179 localization 100.0% (2/2) 2.9 0.017845 0.025171
GO:0006952 defense response 100.0% (2/2) 2.89 0.018237 0.025589
GO:0034641 cellular nitrogen compound metabolic process 100.0% (2/2) 2.87 0.018591 0.02595
GO:0048522 positive regulation of cellular process 100.0% (2/2) 2.85 0.019139 0.026576
GO:0005829 cytosol 100.0% (2/2) 2.81 0.020325 0.027791
GO:0003006 developmental process involved in reproduction 100.0% (2/2) 2.81 0.020201 0.027906
GO:0036464 cytoplasmic ribonucleoprotein granule 50.0% (1/2) 5.61 0.020312 0.027915
GO:0035770 ribonucleoprotein granule 50.0% (1/2) 5.59 0.020615 0.028045
GO:0051171 regulation of nitrogen compound metabolic process 100.0% (2/2) 2.78 0.02118 0.028523
GO:0003676 nucleic acid binding 100.0% (2/2) 2.78 0.021157 0.028637
GO:0051707 response to other organism 100.0% (2/2) 2.74 0.02238 0.02999
GO:0006725 cellular aromatic compound metabolic process 100.0% (2/2) 2.73 0.022757 0.030343
GO:0048519 negative regulation of biological process 100.0% (2/2) 2.7 0.023543 0.031235
GO:0044419 biological process involved in interspecies interaction between organisms 100.0% (2/2) 2.7 0.023693 0.031279
GO:0080090 regulation of primary metabolic process 100.0% (2/2) 2.69 0.024112 0.031676
GO:0060255 regulation of macromolecule metabolic process 100.0% (2/2) 2.66 0.024978 0.032654
GO:0043207 response to external biotic stimulus 100.0% (2/2) 2.64 0.025686 0.033417
GO:0016043 cellular component organization 100.0% (2/2) 2.61 0.026671 0.034037
GO:1901700 response to oxygen-containing compound 100.0% (2/2) 2.61 0.026671 0.034037
GO:0031323 regulation of cellular metabolic process 100.0% (2/2) 2.62 0.026604 0.034279
GO:0009607 response to biotic stimulus 100.0% (2/2) 2.62 0.026563 0.03439
GO:1901360 organic cyclic compound metabolic process 100.0% (2/2) 2.6 0.027268 0.034471
GO:0070925 organelle assembly 50.0% (1/2) 5.19 0.027187 0.034532
GO:0048518 positive regulation of biological process 100.0% (2/2) 2.53 0.029835 0.037539
GO:0071840 cellular component organization or biogenesis 100.0% (2/2) 2.52 0.030234 0.037863
GO:0022414 reproductive process 100.0% (2/2) 2.51 0.030977 0.038613
GO:0032501 multicellular organismal process 100.0% (2/2) 2.47 0.032398 0.040197
GO:0010033 response to organic substance 100.0% (2/2) 2.46 0.033055 0.040636
GO:0003682 chromatin binding 50.0% (1/2) 4.9 0.033234 0.04067
GO:0043167 ion binding 100.0% (2/2) 2.46 0.032934 0.040674
GO:0009411 response to UV 50.0% (1/2) 4.83 0.034944 0.042568
GO:0009628 response to abiotic stimulus 100.0% (2/2) 2.38 0.036714 0.044522
GO:0019222 regulation of metabolic process 100.0% (2/2) 2.38 0.036999 0.044665
GO:0048856 anatomical structure development 100.0% (2/2) 2.33 0.039796 0.047613
GO:0009605 response to external stimulus 100.0% (2/2) 2.33 0.039704 0.047716
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (2) (download table)

InterPro Domains

GO Terms

Family Terms