Coexpression cluster: Cluster_285 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0048826 cotyledon morphogenesis 50.0% (2/4) 8.67 9e-06 0.001645
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific 50.0% (2/4) 5.79 0.000482 0.004484
GO:0009637 response to blue light 50.0% (2/4) 5.82 0.000461 0.004509
GO:0048509 regulation of meristem development 50.0% (2/4) 5.75 0.00051 0.004515
GO:0048598 embryonic morphogenesis 50.0% (2/4) 5.84 0.00045 0.004651
GO:0009648 photoperiodism 50.0% (2/4) 5.88 0.000429 0.004697
GO:0034285 response to disaccharide 50.0% (2/4) 5.9 0.000414 0.004813
GO:0009744 response to sucrose 50.0% (2/4) 5.91 0.000406 0.00504
GO:0040034 regulation of development, heterochronic 50.0% (2/4) 5.94 0.000394 0.005236
GO:0009788 negative regulation of abscisic acid-activated signaling pathway 50.0% (2/4) 5.97 0.000377 0.005395
GO:1901420 negative regulation of response to alcohol 50.0% (2/4) 5.97 0.000377 0.005395
GO:1905958 negative regulation of cellular response to alcohol 50.0% (2/4) 5.97 0.000377 0.005395
GO:0045926 negative regulation of growth 50.0% (2/4) 5.57 0.000653 0.005517
GO:0048573 photoperiodism, flowering 50.0% (2/4) 6.02 0.000353 0.006572
GO:0048506 regulation of timing of meristematic phase transition 50.0% (2/4) 6.08 0.000321 0.006643
GO:0048510 regulation of timing of transition from vegetative to reproductive phase 50.0% (2/4) 6.08 0.000321 0.006643
GO:0036361 racemase activity, acting on amino acids and derivatives 25.0% (1/4) 10.08 0.000921 0.007136
GO:0047661 amino-acid racemase activity 25.0% (1/4) 10.08 0.000921 0.007136
GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives 25.0% (1/4) 9.93 0.001023 0.007611
GO:0034249 negative regulation of cellular amide metabolic process 50.0% (2/4) 6.35 0.000222 0.008243
GO:0009965 leaf morphogenesis 50.0% (2/4) 6.11 0.00031 0.008248
GO:0017148 negative regulation of translation 50.0% (2/4) 6.42 0.000202 0.009379
GO:2000113 negative regulation of cellular macromolecule biosynthetic process 50.0% (2/4) 6.11 0.000308 0.009555
GO:0006417 regulation of translation 50.0% (2/4) 4.96 0.001509 0.010394
GO:0090698 post-embryonic plant morphogenesis 50.0% (2/4) 4.98 0.001476 0.010556
GO:0080022 primary root development 50.0% (2/4) 6.53 0.000174 0.010814
GO:1901419 regulation of response to alcohol 50.0% (2/4) 4.82 0.001823 0.010941
GO:1905957 regulation of cellular response to alcohol 50.0% (2/4) 4.82 0.001823 0.010941
GO:0034248 regulation of cellular amide metabolic process 50.0% (2/4) 4.87 0.00172 0.011428
GO:0009787 regulation of abscisic acid-activated signaling pathway 50.0% (2/4) 4.83 0.001813 0.011628
GO:0009743 response to carbohydrate 50.0% (2/4) 4.67 0.002253 0.013097
GO:2000112 regulation of cellular macromolecule biosynthetic process 50.0% (2/4) 4.54 0.002677 0.013829
GO:0010608 post-transcriptional regulation of gene expression 50.0% (2/4) 4.56 0.002608 0.013858
GO:0030308 negative regulation of cell growth 50.0% (2/4) 6.63 0.000151 0.014008
GO:0001558 regulation of cell growth 50.0% (2/4) 4.57 0.002589 0.014164
GO:1905392 plant organ morphogenesis 50.0% (2/4) 4.57 0.002589 0.014164
GO:0051248 negative regulation of protein metabolic process 50.0% (2/4) 4.5 0.002856 0.014356
GO:0042221 response to chemical 100.0% (4/4) 2.04 0.003541 0.016464
GO:0010629 negative regulation of gene expression 50.0% (2/4) 4.37 0.00337 0.016498
GO:0010035 response to inorganic substance 75.0% (3/4) 2.93 0.003516 0.016769
GO:0009733 response to auxin 50.0% (2/4) 4.25 0.003979 0.018053
GO:0048364 root development 50.0% (2/4) 4.07 0.005125 0.022169
GO:0080142 regulation of salicylic acid biosynthetic process 25.0% (1/4) 7.61 0.005107 0.022617
GO:0042803 protein homodimerization activity 50.0% (2/4) 4.02 0.005466 0.023108
GO:0010648 negative regulation of cell communication 50.0% (2/4) 3.89 0.006495 0.024656
GO:0023057 negative regulation of signaling 50.0% (2/4) 3.89 0.006476 0.025094
GO:0009968 negative regulation of signal transduction 50.0% (2/4) 3.94 0.006077 0.02512
GO:0080140 regulation of jasmonic acid metabolic process 25.0% (1/4) 7.28 0.006432 0.025453
GO:0080141 regulation of jasmonic acid biosynthetic process 25.0% (1/4) 7.3 0.00633 0.025594
GO:0031326 regulation of cellular biosynthetic process 75.0% (3/4) 2.6 0.006898 0.025659
GO:0006357 regulation of transcription by RNA polymerase II 50.0% (2/4) 3.79 0.007422 0.027069
GO:0009889 regulation of biosynthetic process 75.0% (3/4) 2.55 0.00757 0.027077
GO:0010337 regulation of salicylic acid metabolic process 25.0% (1/4) 6.93 0.008162 0.028644
GO:0016854 racemase and epimerase activity 25.0% (1/4) 6.86 0.008569 0.029514
GO:0042335 cuticle development 25.0% (1/4) 6.7 0.009585 0.030738
GO:0010558 negative regulation of macromolecule biosynthetic process 50.0% (2/4) 3.64 0.009107 0.0308
GO:0046983 protein dimerization activity 50.0% (2/4) 3.63 0.009278 0.030816
GO:0048522 positive regulation of cellular process 75.0% (3/4) 2.44 0.00949 0.030968
GO:0031327 negative regulation of cellular biosynthetic process 50.0% (2/4) 3.55 0.010333 0.032032
GO:0003006 developmental process involved in reproduction 75.0% (3/4) 2.4 0.010258 0.03234
GO:0009890 negative regulation of biosynthetic process 50.0% (2/4) 3.51 0.010843 0.033064
GO:0003700 DNA-binding transcription factor activity 50.0% (2/4) 3.49 0.011215 0.033645
GO:1902680 positive regulation of RNA biosynthetic process 50.0% (2/4) 3.39 0.012773 0.034433
GO:0009414 response to water deprivation 50.0% (2/4) 3.46 0.01172 0.034601
GO:1903508 positive regulation of nucleic acid-templated transcription 50.0% (2/4) 3.39 0.012747 0.034867
GO:0080090 regulation of primary metabolic process 75.0% (3/4) 2.27 0.01323 0.035154
GO:0009651 response to salt stress 50.0% (2/4) 3.39 0.01272 0.035313
GO:0009415 response to water 50.0% (2/4) 3.4 0.012681 0.035737
GO:0001067 transcription regulatory region nucleic acid binding 50.0% (2/4) 3.33 0.013855 0.035793
GO:0045893 positive regulation of DNA-templated transcription 50.0% (2/4) 3.41 0.012523 0.035834
GO:0040008 regulation of growth 50.0% (2/4) 3.42 0.012365 0.035936
GO:0000976 transcription cis-regulatory region binding 50.0% (2/4) 3.34 0.013759 0.036045
GO:0001101 response to acid chemical 50.0% (2/4) 3.31 0.014188 0.03615
GO:1990837 sequence-specific double-stranded DNA binding 50.0% (2/4) 3.3 0.014384 0.036153
GO:1901700 response to oxygen-containing compound 75.0% (3/4) 2.2 0.015287 0.037412
GO:0051254 positive regulation of RNA metabolic process 50.0% (2/4) 3.24 0.015554 0.037573
GO:0031323 regulation of cellular metabolic process 75.0% (3/4) 2.2 0.015232 0.037775
GO:0099402 plant organ development 50.0% (2/4) 3.22 0.015964 0.038068
GO:0140110 transcription regulator activity 50.0% (2/4) 3.21 0.016334 0.038456
GO:0051246 regulation of protein metabolic process 50.0% (2/4) 3.17 0.0171 0.038787
GO:0003690 double-stranded DNA binding 50.0% (2/4) 3.19 0.016812 0.039089
GO:0010557 positive regulation of macromolecule biosynthetic process 50.0% (2/4) 3.18 0.017024 0.039092
GO:0051128 regulation of cellular component organization 50.0% (2/4) 3.11 0.018665 0.03945
GO:0022414 reproductive process 75.0% (3/4) 2.09 0.018927 0.039555
GO:0045935 positive regulation of nucleobase-containing compound metabolic process 50.0% (2/4) 3.13 0.0181 0.039606
GO:0042304 regulation of fatty acid biosynthetic process 25.0% (1/4) 5.74 0.018597 0.039758
GO:0048585 negative regulation of response to stimulus 50.0% (2/4) 3.14 0.017975 0.039802
GO:0006970 response to osmotic stress 50.0% (2/4) 3.11 0.018491 0.039993
GO:0048518 positive regulation of biological process 75.0% (3/4) 2.12 0.01794 0.040204
GO:0031324 negative regulation of cellular metabolic process 50.0% (2/4) 3.07 0.01964 0.040589
GO:0043565 sequence-specific DNA binding 50.0% (2/4) 3.06 0.019997 0.040874
GO:0051172 negative regulation of nitrogen compound metabolic process 50.0% (2/4) 3.05 0.020243 0.040925
GO:0010193 response to ozone 25.0% (1/4) 5.59 0.020613 0.041226
GO:0031328 positive regulation of cellular biosynthetic process 50.0% (2/4) 3.0 0.021557 0.042655
GO:0009863 salicylic acid mediated signaling pathway 25.0% (1/4) 5.45 0.022627 0.043387
GO:0050896 response to stimulus 100.0% (4/4) 1.37 0.022508 0.043609
GO:0009891 positive regulation of biosynthetic process 50.0% (2/4) 2.97 0.022288 0.043638
GO:0019217 regulation of fatty acid metabolic process 25.0% (1/4) 5.4 0.023532 0.044662
GO:0019222 regulation of metabolic process 75.0% (3/4) 1.96 0.024357 0.045762
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (4) (download table)

InterPro Domains

GO Terms

Family Terms