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Co-expression neighborhood:
SOLTUB.AGRIA.G00000034952
(HRR Network (HRR 50 & PCC 0.5))
Nodes show
No Feature
Clade
Depth
Family
(default)
Label Co-occ.
Default
Clade
Family
Label Co-occ.
Edge Color
No Feature
(default)
Depth
PCC
HRR
Edge Width
Default
Depth
HRR
Filter
Cutoff:
50
Cut-off: 50
Layout
Breadthfirst
Circle
Concentric
Cose
Grid
Random
Depth
Direct
2
nd
Degree
Export
Data
Image
image/svg+xml
Default
First
Second
Co-Expressed Pair
ECC Pair
Edges
Color
Depth
0
2
Score
0
30
PCC
0.5
1
HRR
100
1
ECC
0
1
Width
Depth
0
1
2
ECC
0
1
Default
Nodes
Color
Neighbors
15+
1
Default
Depth
0
2
Clade
1
15
species in clade
Export Data
XGMML
(compatible with
Cytoscape
)
Other formats, compatible with
Cytoscape.js
JSON
(network only)
JSON
(network + colors/shapes)
Export Image
Image with Legend
SVG
PNG
Other Options
Image
SVG
PNG
Legend
SVG
PNG
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Tutorial
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Co-expression neighborhood:
SOLTUB.AGRIA.G00000016674
(HRR Network (HRR 50 & PCC 0.5))
Nodes show
No Feature
Clade
Depth
Family
(default)
Label Co-occ.
Default
Clade
Family
Label Co-occ.
Edge Color
No Feature
(default)
Depth
PCC
HRR
Edge Width
Default
Depth
HRR
Filter
Cutoff:
50
Layout
Breadthfirst
Circle
Concentric
Cose
Grid
Random
Depth
Direct
2
nd
Degree
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