SOLTUB.AGRIA.G00000011254

Description : Pentatricopeptide repeat-containing protein, putative

Gene families : OG_02_0008467 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000011254
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_210

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	AHRD
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006412	translation	IEA	AHRD
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007165	signal transduction	IEA	AHRD
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
CC	GO:0009507	chloroplast	IEA	AHRD
CC	GO:0009532	plastid stroma	IEA	AHRD
CC	GO:0009536	plastid	None	Extended
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009793	embryo development ending in seed dormancy	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	IEA	AHRD
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	IEA	AHRD
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003958	NADPH-hemoprotein reductase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004402	histone acetyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004596	peptide alpha-N-acetyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005216	ion channel activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005253	anion channel activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005310	dicarboxylic acid transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005342	organic acid transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0006473	protein acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006474	N-terminal protein amino acid acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006475	internal protein amino acid acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006787	porphyrin-containing compound catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006835	dicarboxylic acid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0007062	sister chromatid cohesion	IEP	Predict GO terms from Neighborhoods
BP	GO:0007064	mitotic sister chromatid cohesion	IEP	Predict GO terms from Neighborhoods
MF	GO:0008080	N-acetyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008514	organic anion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010044	response to aluminum ion	IEP	Predict GO terms from Neighborhoods
BP	GO:0010118	stomatal movement	IEP	Predict GO terms from Neighborhoods
MF	GO:0015103	inorganic anion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015140	malate transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015267	channel activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015556	C4-dicarboxylate transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0015698	inorganic anion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015740	C4-dicarboxylate transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015743	malate transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015994	chlorophyll metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0015996	chlorophyll catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016036	cellular response to phosphate starvation	IEP	Predict GO terms from Neighborhoods
MF	GO:0016407	acetyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016410	N-acyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0016573	histone acetylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	Predict GO terms from Neighborhoods
MF	GO:0016653	oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor	IEP	Predict GO terms from Neighborhoods
BP	GO:0017196	N-terminal peptidyl-methionine acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0018206	peptidyl-methionine modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0018393	internal peptidyl-lysine acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0018394	peptidyl-lysine acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0019395	fatty acid oxidation	IEP	Predict GO terms from Neighborhoods
MF	GO:0022803	passive transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0030258	lipid modification	IEP	Predict GO terms from Neighborhoods
CC	GO:0031090	organelle membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0031365	N-terminal protein amino acid modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0033013	tetrapyrrole metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0033015	tetrapyrrole catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0033304	chlorophyll a metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0033310	chlorophyll a catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0034212	peptide N-acetyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0034440	lipid oxidation	IEP	Predict GO terms from Neighborhoods
CC	GO:0035618	root hair	IEP	Predict GO terms from Neighborhoods
BP	GO:0043543	protein acylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0043966	histone H3 acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0043967	histone H4 acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0046149	pigment catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046942	carboxylic acid transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0046943	carboxylic acid transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051321	meiotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0051604	protein maturation	IEP	Predict GO terms from Neighborhoods
MF	GO:0061733	peptide-lysine-N-acetyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0071423	malate transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0090332	stomatal closure	IEP	Predict GO terms from Neighborhoods
CC	GO:0098588	bounding membrane of organelle	IEP	Predict GO terms from Neighborhoods
MF	GO:0106371	fluorescent chlorophyll catabolite monooxygenase (deformylase) activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1903825	organic acid transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1905039	carboxylic acid transmembrane transport	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	996	1041
IPR002885	Pentatricopeptide_repeat	259	303
IPR002885	Pentatricopeptide_repeat	329	374
IPR002885	Pentatricopeptide_repeat	434	482
IPR002885	Pentatricopeptide_repeat	507	549
IPR002885	Pentatricopeptide_repeat	895	919
IPR002885	Pentatricopeptide_repeat	821	849
IPR002885	Pentatricopeptide_repeat	1103	1130
IPR002885	Pentatricopeptide_repeat	961	990
IPR002885	Pentatricopeptide_repeat	1067	1095
IPR002885	Pentatricopeptide_repeat	927	955
IPR002885	Pentatricopeptide_repeat	402	432
IPR002885	Pentatricopeptide_repeat	1137	1165
IPR002885	Pentatricopeptide_repeat	261	293
IPR002885	Pentatricopeptide_repeat	332	365
IPR002885	Pentatricopeptide_repeat	1137	1168
IPR002885	Pentatricopeptide_repeat	438	471
IPR002885	Pentatricopeptide_repeat	996	1027
IPR002885	Pentatricopeptide_repeat	961	993
IPR002885	Pentatricopeptide_repeat	1031	1063
IPR002885	Pentatricopeptide_repeat	402	433
IPR002885	Pentatricopeptide_repeat	368	401
IPR002885	Pentatricopeptide_repeat	472	506
IPR002885	Pentatricopeptide_repeat	1067	1098
IPR002885	Pentatricopeptide_repeat	544	575
IPR002885	Pentatricopeptide_repeat	926	958
IPR002885	Pentatricopeptide_repeat	821	853
IPR002885	Pentatricopeptide_repeat	508	540

External Links

No external refs found!

SOLTUB.AGRIA.G00000011254

Expression Profile

Co-expression Networks

Functional Annotation