SOLTUB.AGRIA.G00000001132

Description : Pectate lyase

Gene families : OG_02_0011949 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000001132
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_11

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009624	response to nematode	IEA	AHRD
BP	GO:0009664	plant-type cell wall organization	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016829	lyase activity	IEA	AHRD
BP	GO:0043207	response to external biotic stimulus	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	IEA	AHRD

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Type	GO Term	Name	Evidence	Source
MF	GO:0003779	actin binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003785	actin monomer binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0004630	phospholipase D activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005215	transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005543	phospholipid binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0005546	phosphatidylinositol-4,5-bisphosphate binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0005548	phospholipid transporter activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005884	actin filament	IEP	Predict GO terms from Neighborhoods
BP	GO:0006811	ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006813	potassium ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0008064	regulation of actin polymerization or depolymerization	IEP	Predict GO terms from Neighborhoods
MF	GO:0008092	cytoskeletal protein binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0008289	lipid binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0009395	phospholipid catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0009674	potassium:sodium symporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010044	response to aluminum ion	IEP	Predict GO terms from Neighborhoods
BP	GO:0010155	regulation of proton transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0010358	leaf shaping	IEP	Predict GO terms from Neighborhoods
MF	GO:0015079	potassium ion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015081	sodium ion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015370	solute:sodium symporter activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0016020	membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0030001	metal ion transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0030775	glucuronoxylan 4-O-methyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0030832	regulation of actin filament length	IEP	Predict GO terms from Neighborhoods
BP	GO:0030833	regulation of actin filament polymerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0030837	negative regulation of actin filament polymerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0031333	negative regulation of protein-containing complex assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0031984	organelle subcompartment	IEP	Predict GO terms from Neighborhoods
BP	GO:0032271	regulation of protein polymerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0032272	negative regulation of protein polymerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0032507	maintenance of protein location in cell	IEP	Predict GO terms from Neighborhoods
BP	GO:0034638	phosphatidylcholine catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042989	sequestering of actin monomers	IEP	Predict GO terms from Neighborhoods
BP	GO:0045185	maintenance of protein location	IEP	Predict GO terms from Neighborhoods
BP	GO:0045492	xylan biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045833	negative regulation of lipid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046466	membrane lipid catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046470	phosphatidylcholine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046475	glycerophospholipid catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046503	glycerolipid catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051055	negative regulation of lipid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051494	negative regulation of cytoskeleton organization	IEP	Predict GO terms from Neighborhoods
MF	GO:0070290	N-acylphosphatidylethanolamine-specific phospholipase D activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0071071	regulation of phospholipid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0098655	cation transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0098659	inorganic cation import across plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0098660	inorganic ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0098662	inorganic cation transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0099587	inorganic ion import across plasma membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0120013	lipid transfer activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0120014	phospholipid transfer activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1902904	negative regulation of supramolecular fiber organization	IEP	Predict GO terms from Neighborhoods
MF	GO:1902936	phosphatidylinositol bisphosphate binding	IEP	Predict GO terms from Neighborhoods
BP	GO:1903725	regulation of phospholipid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1990573	potassium ion import across plasma membrane	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002022	Pec_lyase	155	339
IPR011050	Pectin_lyase_fold/virulence	70	418
IPR007524	Pec_lyase_N	28	56

External Links

No external refs found!

SOLTUB.AGRIA.G00000001132

Expression Profile

Co-expression Networks

Functional Annotation