SOLTUB.AGRIA.G00000011839

Description : Fact complex subunit ssrp1

Gene families : OG_02_0002426 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000011839
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_74

Type	GO Term	Name	Evidence	Source
BP	GO:0000741	karyogamy	None	Extended
CC	GO:0000785	chromatin	None	Extended
CC	GO:0000791	euchromatin	IEA	AHRD
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	AHRD
MF	GO:0003682	chromatin binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005694	chromosome	None	Extended
CC	GO:0005700	polytene chromosome	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	IEA	AHRD
BP	GO:0006281	DNA repair	IEA	AHRD
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006338	chromatin remodeling	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	AHRD
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0006997	nucleus organization	None	Extended
CC	GO:0008023	transcription elongation factor complex	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0009991	response to extracellular stimulus	None	Extended
BP	GO:0010197	polar nucleus fusion	IEA	AHRD
BP	GO:0010228	vegetative to reproductive phase transition of meristem	IEA	AHRD
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0030447	filamentous growth	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031334	positive regulation of protein-containing complex assembly	IEA	AHRD
MF	GO:0031491	nucleosome binding	IEA	AHRD
BP	GO:0031667	response to nutrient levels	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034728	nucleosome organization	IEA	AHRD
CC	GO:0035101	FACT complex	IEA	AHRD
BP	GO:0040007	growth	None	Extended
MF	GO:0042393	histone binding	IEA	AHRD
BP	GO:0042594	response to starvation	IEA	AHRD
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043254	regulation of protein-containing complex assembly	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0044087	regulation of cellular component biogenesis	None	Extended
BP	GO:0044089	positive regulation of cellular component biogenesis	None	Extended
BP	GO:0044182	filamentous growth of a population of unicellular organisms	IEA	AHRD
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
MF	GO:0044877	protein-containing complex binding	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048284	organelle fusion	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051130	positive regulation of cellular component organization	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071824	protein-DNA complex subunit organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0098687	chromosomal region	IEA	AHRD
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1902275	regulation of chromatin organization	IEA	AHRD
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000012	single strand break repair	IEP	Predict GO terms from Neighborhoods
CC	GO:0000243	commitment complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0000278	mitotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0000380	alternative mRNA splicing, via spliceosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0000381	regulation of alternative mRNA splicing, via spliceosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0000389	mRNA 3'-splice site recognition	IEP	Predict GO terms from Neighborhoods
BP	GO:0000395	mRNA 5'-splice site recognition	IEP	Predict GO terms from Neighborhoods
CC	GO:0000419	RNA polymerase V complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0000428	DNA-directed RNA polymerase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0001674	female germ cell nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0001756	somitogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0001947	heart looping	IEP	Predict GO terms from Neighborhoods
BP	GO:0002119	nematode larval development	IEP	Predict GO terms from Neighborhoods
BP	GO:0002164	larval development	IEP	Predict GO terms from Neighborhoods
BP	GO:0002230	positive regulation of defense response to virus by host	IEP	Predict GO terms from Neighborhoods
BP	GO:0002244	hematopoietic progenitor cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0003012	muscle system process	IEP	Predict GO terms from Neighborhoods
BP	GO:0003143	embryonic heart tube morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0003228	atrial cardiac muscle tissue development	IEP	Predict GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003729	mRNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003909	DNA ligase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003910	DNA ligase (ATP) activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005681	spliceosomal complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0006266	DNA ligation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006284	base-excision repair	IEP	Predict GO terms from Neighborhoods
BP	GO:0006289	nucleotide-excision repair	IEP	Predict GO terms from Neighborhoods
BP	GO:0006302	double-strand break repair	IEP	Predict GO terms from Neighborhoods
BP	GO:0006303	double-strand break repair via nonhomologous end joining	IEP	Predict GO terms from Neighborhoods
BP	GO:0006304	DNA modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0006305	DNA alkylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006306	DNA methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006310	DNA recombination	IEP	Predict GO terms from Neighborhoods
BP	GO:0006346	DNA methylation-dependent heterochromatin formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006376	mRNA splice site selection	IEP	Predict GO terms from Neighborhoods
BP	GO:0006446	regulation of translational initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006936	muscle contraction	IEP	Predict GO terms from Neighborhoods
BP	GO:0006941	striated muscle contraction	IEP	Predict GO terms from Neighborhoods
BP	GO:0007127	meiosis I	IEP	Predict GO terms from Neighborhoods
BP	GO:0007519	skeletal muscle tissue development	IEP	Predict GO terms from Neighborhoods
BP	GO:0007530	sex determination	IEP	Predict GO terms from Neighborhoods
BP	GO:0007569	obsolete cell aging	IEP	Predict GO terms from Neighborhoods
MF	GO:0008187	poly-pyrimidine tract binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0009791	post-embryonic development	IEP	Predict GO terms from Neighborhoods
BP	GO:0009892	negative regulation of metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009952	anterior/posterior pattern specification	IEP	Predict GO terms from Neighborhoods
BP	GO:0010112	regulation of systemic acquired resistance	IEP	Predict GO terms from Neighborhoods
BP	GO:0010171	body morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010172	embryonic body morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010225	response to UV-C	IEP	Predict GO terms from Neighborhoods
BP	GO:0010363	regulation of plant-type hypersensitive response	IEP	Predict GO terms from Neighborhoods
CC	GO:0010369	chromocenter	IEP	Predict GO terms from Neighborhoods
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010629	negative regulation of gene expression	IEP	Predict GO terms from Neighborhoods
BP	GO:0010830	regulation of myotube differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0014706	striated muscle tissue development	IEP	Predict GO terms from Neighborhoods
CC	GO:0015030	Cajal body	IEP	Predict GO terms from Neighborhoods
MF	GO:0015036	disulfide oxidoreductase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0015074	DNA integration	IEP	Predict GO terms from Neighborhoods
CC	GO:0016604	nuclear body	IEP	Predict GO terms from Neighborhoods
CC	GO:0016605	PML body	IEP	Predict GO terms from Neighborhoods
CC	GO:0016607	nuclear speck	IEP	Predict GO terms from Neighborhoods
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	Predict GO terms from Neighborhoods
MF	GO:0017069	snRNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0018105	peptidyl-serine phosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0018209	peptidyl-serine modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0019221	cytokine-mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
MF	GO:0019904	protein domain specific binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0023019	signal transduction involved in regulation of gene expression	IEP	Predict GO terms from Neighborhoods
MF	GO:0030619	U1 snRNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0030620	U2 snRNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0030628	pre-mRNA 3'-splice site binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0030880	RNA polymerase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0031047	gene silencing by RNA	IEP	Predict GO terms from Neighborhoods
BP	GO:0031048	small non-coding RNA-dependent heterochromatin formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0031329	regulation of cellular catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031507	heterochromatin formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0031935	obsolete regulation of chromatin silencing	IEP	Predict GO terms from Neighborhoods
BP	GO:0032507	maintenance of protein location in cell	IEP	Predict GO terms from Neighborhoods
CC	GO:0032838	plasma membrane bounded cell projection cytoplasm	IEP	Predict GO terms from Neighborhoods
CC	GO:0032839	dendrite cytoplasm	IEP	Predict GO terms from Neighborhoods
BP	GO:0033119	negative regulation of RNA splicing	IEP	Predict GO terms from Neighborhoods
BP	GO:0033120	positive regulation of RNA splicing	IEP	Predict GO terms from Neighborhoods
BP	GO:0033567	DNA replication, Okazaki fragment processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0034052	positive regulation of plant-type hypersensitive response	IEP	Predict GO terms from Neighborhoods
CC	GO:0035061	interchromatin granule	IEP	Predict GO terms from Neighborhoods
MF	GO:0035064	methylated histone binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0035145	exon-exon junction complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0035282	segmentation	IEP	Predict GO terms from Neighborhoods
BP	GO:0035510	DNA dealkylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0035753	maintenance of DNA trinucleotide repeats	IEP	Predict GO terms from Neighborhoods
MF	GO:0036002	pre-mRNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0040029	epigenetic regulation of gene expression	IEP	Predict GO terms from Neighborhoods
CC	GO:0043073	germ cell nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0043279	response to alkaloid	IEP	Predict GO terms from Neighborhoods
BP	GO:0043484	regulation of RNA splicing	IEP	Predict GO terms from Neighborhoods
BP	GO:0043487	regulation of RNA stability	IEP	Predict GO terms from Neighborhoods
BP	GO:0043488	regulation of mRNA stability	IEP	Predict GO terms from Neighborhoods
BP	GO:0043489	RNA stabilization	IEP	Predict GO terms from Neighborhoods
BP	GO:0043570	maintenance of DNA repeat elements	IEP	Predict GO terms from Neighborhoods
BP	GO:0044030	regulation of DNA methylation	IEP	Predict GO terms from Neighborhoods
CC	GO:0044304	main axon	IEP	Predict GO terms from Neighborhoods
MF	GO:0044547	DNA topoisomerase binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0044728	DNA methylation or demethylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045185	maintenance of protein location	IEP	Predict GO terms from Neighborhoods
BP	GO:0045814	negative regulation of gene expression, epigenetic	IEP	Predict GO terms from Neighborhoods
BP	GO:0045948	positive regulation of translational initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0048024	regulation of mRNA splicing, via spliceosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0048025	negative regulation of mRNA splicing, via spliceosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0048145	regulation of fibroblast proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:0048147	negative regulation of fibroblast proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:0048255	mRNA stabilization	IEP	Predict GO terms from Neighborhoods
BP	GO:0048468	cell development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048666	neuron development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048702	embryonic neurocranium morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0048738	cardiac muscle tissue development	IEP	Predict GO terms from Neighborhoods
BP	GO:0050684	regulation of mRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0050686	negative regulation of mRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0050688	regulation of defense response to virus	IEP	Predict GO terms from Neighborhoods
BP	GO:0050691	regulation of defense response to virus by host	IEP	Predict GO terms from Neighborhoods
MF	GO:0050733	RS domain binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051147	regulation of muscle cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0051149	positive regulation of muscle cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0051153	regulation of striated muscle cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0051155	positive regulation of striated muscle cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0051457	maintenance of protein location in nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0051495	positive regulation of cytoskeleton organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051651	maintenance of location in cell	IEP	Predict GO terms from Neighborhoods
CC	GO:0055029	nuclear DNA-directed RNA polymerase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0060048	cardiac muscle contraction	IEP	Predict GO terms from Neighborhoods
BP	GO:0060297	regulation of sarcomere organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0060298	positive regulation of sarcomere organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0060537	muscle tissue development	IEP	Predict GO terms from Neighborhoods
BP	GO:0060562	epithelial tube morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0061013	regulation of mRNA catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0061982	meiosis I cell cycle process	IEP	Predict GO terms from Neighborhoods
MF	GO:0070742	C2H2 zinc finger domain binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0070828	heterochromatin organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0070988	demethylation	IEP	Predict GO terms from Neighborhoods
CC	GO:0071004	U2-type prespliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0071010	prespliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0071598	neuronal ribonucleoprotein granule	IEP	Predict GO terms from Neighborhoods
CC	GO:0071601	sphere organelle	IEP	Predict GO terms from Neighborhoods
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0072595	maintenance of protein localization in organelle	IEP	Predict GO terms from Neighborhoods
BP	GO:0080111	DNA demethylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0080188	gene silencing by RNA-directed DNA methylation	IEP	Predict GO terms from Neighborhoods
CC	GO:0089701	U2AF complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0097400	interleukin-17-mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
CC	GO:0099568	cytoplasmic region	IEP	Predict GO terms from Neighborhoods
BP	GO:0110012	protein localization to P-body	IEP	Predict GO terms from Neighborhoods
BP	GO:0110020	regulation of actomyosin structure organization	IEP	Predict GO terms from Neighborhoods
CC	GO:0120111	neuron projection cytoplasm	IEP	Predict GO terms from Neighborhoods
MF	GO:0140034	methylation-dependent protein binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0140718	facultative heterochromatin formation	IEP	Predict GO terms from Neighborhoods
BP	GO:1901672	positive regulation of systemic acquired resistance	IEP	Predict GO terms from Neighborhoods
BP	GO:1902288	regulation of defense response to oomycetes	IEP	Predict GO terms from Neighborhoods
BP	GO:1902290	positive regulation of defense response to oomycetes	IEP	Predict GO terms from Neighborhoods
BP	GO:1902369	negative regulation of RNA catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902373	negative regulation of mRNA catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902905	positive regulation of supramolecular fiber organization	IEP	Predict GO terms from Neighborhoods
BP	GO:1903311	regulation of mRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903312	negative regulation of mRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903461	Okazaki fragment processing involved in mitotic DNA replication	IEP	Predict GO terms from Neighborhoods
BP	GO:1904975	response to bleomycin	IEP	Predict GO terms from Neighborhoods
MF	GO:1990935	splicing factor binding	IEP	Predict GO terms from Neighborhoods
BP	GO:2000683	regulation of cellular response to X-ray	IEP	Predict GO terms from Neighborhoods
BP	GO:2000685	positive regulation of cellular response to X-ray	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR013719	RTT106/SPT16-like_middle_dom	350	439
IPR009071	HMG_box_dom	555	623
IPR024954	SSRP1_DD	106	174
IPR036910	HMG_box_dom_sf	546	627
IPR035417	SSRP1/POB3_N	6	98

External Links

No external refs found!

SOLTUB.AGRIA.G00000011839

Expression Profile

Co-expression Networks

Functional Annotation