SOLTUB.AGRIA.G00000012280


Description : XH/XS domain protein


Gene families : OG_02_0005779 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000012280
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_83

Target Alias Description ECC score Gene Family Method Actions
SOLTUB.AGRIA.G00000012299 No alias XH/XS domain protein 0.07 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000012299 No alias XH/XS domain protein 0.07 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000012299 No alias XH/XS domain protein 0.07 Orthogroups with 8 Potato genotypes

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA AHRD
MF GO:0003725 double-stranded RNA binding IEA AHRD
BP GO:0006306 DNA methylation IEA AHRD
CC GO:0009506 plasmodesma IEA AHRD
BP GO:0010569 regulation of double-strand break repair via homologous recombination IEA AHRD
MF GO:0043621 protein self-association IEA AHRD
BP GO:0046686 response to cadmium ion IEA AHRD
BP GO:0080188 gene silencing by RNA-directed DNA methylation IEA AHRD
Type GO Term Name Evidence Source
CC GO:0000228 nuclear chromosome IEP Predict GO terms from Neighborhoods
CC GO:0000785 chromatin IEP Predict GO terms from Neighborhoods
CC GO:0000791 euchromatin IEP Predict GO terms from Neighborhoods
CC GO:0000793 condensed chromosome IEP Predict GO terms from Neighborhoods
CC GO:0000794 condensed nuclear chromosome IEP Predict GO terms from Neighborhoods
MF GO:0003684 damaged DNA binding IEP Predict GO terms from Neighborhoods
CC GO:0005652 nuclear lamina IEP Predict GO terms from Neighborhoods
CC GO:0005694 chromosome IEP Predict GO terms from Neighborhoods
CC GO:0005700 polytene chromosome IEP Predict GO terms from Neighborhoods
CC GO:0005875 microtubule associated complex IEP Predict GO terms from Neighborhoods
BP GO:0006290 pyrimidine dimer repair IEP Predict GO terms from Neighborhoods
BP GO:0006298 mismatch repair IEP Predict GO terms from Neighborhoods
BP GO:0006974 cellular response to DNA damage stimulus IEP Predict GO terms from Neighborhoods
BP GO:0007062 sister chromatid cohesion IEP Predict GO terms from Neighborhoods
BP GO:0007064 mitotic sister chromatid cohesion IEP Predict GO terms from Neighborhoods
BP GO:0007129 homologous chromosome pairing at meiosis IEP Predict GO terms from Neighborhoods
BP GO:0007131 reciprocal meiotic recombination IEP Predict GO terms from Neighborhoods
BP GO:0007399 nervous system development IEP Predict GO terms from Neighborhoods
BP GO:0007476 imaginal disc-derived wing morphogenesis IEP Predict GO terms from Neighborhoods
MF GO:0008013 beta-catenin binding IEP Predict GO terms from Neighborhoods
MF GO:0008170 N-methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0008276 protein methyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0009886 post-embryonic animal morphogenesis IEP Predict GO terms from Neighborhoods
MF GO:0010313 phytochrome binding IEP Predict GO terms from Neighborhoods
CC GO:0010369 chromocenter IEP Predict GO terms from Neighborhoods
MF GO:0016278 lysine N-methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Predict GO terms from Neighborhoods
CC GO:0016363 nuclear matrix IEP Predict GO terms from Neighborhoods
BP GO:0018023 peptidyl-lysine trimethylation IEP Predict GO terms from Neighborhoods
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0030983 mismatched DNA binding IEP Predict GO terms from Neighborhoods
CC GO:0031306 intrinsic component of mitochondrial outer membrane IEP Predict GO terms from Neighborhoods
CC GO:0031307 integral component of mitochondrial outer membrane IEP Predict GO terms from Neighborhoods
BP GO:0031324 negative regulation of cellular metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0031490 chromatin DNA binding IEP Predict GO terms from Neighborhoods
CC GO:0032300 mismatch repair complex IEP Predict GO terms from Neighborhoods
CC GO:0032592 integral component of mitochondrial membrane IEP Predict GO terms from Neighborhoods
BP GO:0034401 obsolete chromatin organization involved in regulation of transcription IEP Predict GO terms from Neighborhoods
CC GO:0035097 histone methyltransferase complex IEP Predict GO terms from Neighborhoods
BP GO:0035107 appendage morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0035114 imaginal disc-derived appendage morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0035120 post-embryonic appendage morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0035825 homologous recombination IEP Predict GO terms from Neighborhoods
MF GO:0042054 histone methyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0042138 meiotic DNA double-strand break formation IEP Predict GO terms from Neighborhoods
MF GO:0042800 histone methyltransferase activity (H3-K4 specific) IEP Predict GO terms from Neighborhoods
BP GO:0043578 nuclear matrix organization IEP Predict GO terms from Neighborhoods
BP GO:0043627 response to estrogen IEP Predict GO terms from Neighborhoods
CC GO:0044665 MLL1/2 complex IEP Predict GO terms from Neighborhoods
CC GO:0044666 MLL3/4 complex IEP Predict GO terms from Neighborhoods
MF GO:0048027 mRNA 5'-UTR binding IEP Predict GO terms from Neighborhoods
CC GO:0048188 Set1C/COMPASS complex IEP Predict GO terms from Neighborhoods
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051568 histone H3-K4 methylation IEP Predict GO terms from Neighborhoods
BP GO:0060776 simple leaf morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0061982 meiosis I cell cycle process IEP Predict GO terms from Neighborhoods
BP GO:0070192 chromosome organization involved in meiotic cell cycle IEP Predict GO terms from Neighborhoods
CC GO:0071339 MLL1 complex IEP Predict GO terms from Neighborhoods
BP GO:0080182 histone H3-K4 trimethylation IEP Predict GO terms from Neighborhoods
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Predict GO terms from Neighborhoods
BP GO:0097298 regulation of nucleus size IEP Predict GO terms from Neighborhoods
CC GO:0098573 intrinsic component of mitochondrial membrane IEP Predict GO terms from Neighborhoods
BP GO:0140527 reciprocal homologous recombination IEP Predict GO terms from Neighborhoods
BP GO:0140588 chromatin looping IEP Predict GO terms from Neighborhoods
BP GO:1902584 positive regulation of response to water deprivation IEP Predict GO terms from Neighborhoods
BP GO:1903046 meiotic cell cycle process IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR005380 XS_domain 114 221
IPR005379 FDM1-5/IDN2_XH 502 633
IPR005381 Znf-XS_domain 43 85
No external refs found!