SOLTUB.AGRIA.G00000012284


Description : 60S ribosomal protein L7


Gene families : OG_02_0002465 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000012284
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_37


Type GO Term Name Evidence Source
MF GO:0000171 ribonuclease MRP activity IEA AHRD
CC GO:0000172 ribonuclease MRP complex IEA AHRD
BP GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA AHRD
BP GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA AHRD
MF GO:0003729 mRNA binding IEA AHRD
MF GO:0003735 structural constituent of ribosome IEA AHRD
CC GO:0005618 cell wall IEA AHRD
CC GO:0005730 nucleolus IEA AHRD
CC GO:0005774 vacuolar membrane IEA AHRD
CC GO:0005886 plasma membrane IEA AHRD
BP GO:0006412 translation IEA AHRD
MF GO:0008097 5S rRNA binding IEA AHRD
CC GO:0009507 chloroplast IEA AHRD
CC GO:0022625 cytosolic large ribosomal subunit IEA AHRD
CC GO:0031672 A band IEA AHRD
CC GO:0042788 polysomal ribosome IEA AHRD
CC GO:0045202 synapse IEA AHRD
BP GO:0097421 liver regeneration IEA AHRD
Type GO Term Name Evidence Source
BP GO:0000491 small nucleolar ribonucleoprotein complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0000492 box C/D snoRNP assembly IEP Predict GO terms from Neighborhoods
CC GO:0000932 P-body IEP Predict GO terms from Neighborhoods
BP GO:0001817 regulation of cytokine production IEP Predict GO terms from Neighborhoods
BP GO:0001819 positive regulation of cytokine production IEP Predict GO terms from Neighborhoods
BP GO:0001959 regulation of cytokine-mediated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0001960 negative regulation of cytokine-mediated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0002119 nematode larval development IEP Predict GO terms from Neighborhoods
BP GO:0002164 larval development IEP Predict GO terms from Neighborhoods
BP GO:0002181 cytoplasmic translation IEP Predict GO terms from Neighborhoods
BP GO:0002230 positive regulation of defense response to virus by host IEP Predict GO terms from Neighborhoods
BP GO:0002376 immune system process IEP Predict GO terms from Neighborhoods
BP GO:0002577 regulation of antigen processing and presentation IEP Predict GO terms from Neighborhoods
BP GO:0002682 regulation of immune system process IEP Predict GO terms from Neighborhoods
BP GO:0002683 negative regulation of immune system process IEP Predict GO terms from Neighborhoods
BP GO:0002831 regulation of response to biotic stimulus IEP Predict GO terms from Neighborhoods
BP GO:0003008 system process IEP Predict GO terms from Neighborhoods
BP GO:0003014 renal system process IEP Predict GO terms from Neighborhoods
BP GO:0003091 renal water homeostasis IEP Predict GO terms from Neighborhoods
MF GO:0003730 mRNA 3'-UTR binding IEP Predict GO terms from Neighborhoods
MF GO:0005372 water transmembrane transporter activity IEP Predict GO terms from Neighborhoods
CC GO:0005654 nucleoplasm IEP Predict GO terms from Neighborhoods
BP GO:0006446 regulation of translational initiation IEP Predict GO terms from Neighborhoods
BP GO:0006611 protein export from nucleus IEP Predict GO terms from Neighborhoods
BP GO:0006833 water transport IEP Predict GO terms from Neighborhoods
BP GO:0006913 nucleocytoplasmic transport IEP Predict GO terms from Neighborhoods
BP GO:0006959 humoral immune response IEP Predict GO terms from Neighborhoods
BP GO:0006986 response to unfolded protein IEP Predict GO terms from Neighborhoods
BP GO:0007162 negative regulation of cell adhesion IEP Predict GO terms from Neighborhoods
BP GO:0007284 spermatogonial cell division IEP Predict GO terms from Neighborhoods
BP GO:0007611 learning or memory IEP Predict GO terms from Neighborhoods
BP GO:0007612 learning IEP Predict GO terms from Neighborhoods
BP GO:0007613 memory IEP Predict GO terms from Neighborhoods
BP GO:0008283 cell population proliferation IEP Predict GO terms from Neighborhoods
BP GO:0008340 determination of adult lifespan IEP Predict GO terms from Neighborhoods
BP GO:0008593 regulation of Notch signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0008643 carbohydrate transport IEP Predict GO terms from Neighborhoods
BP GO:0009791 post-embryonic development IEP Predict GO terms from Neighborhoods
CC GO:0009897 external side of plasma membrane IEP Predict GO terms from Neighborhoods
BP GO:0010036 response to boron-containing substance IEP Predict GO terms from Neighborhoods
CC GO:0010494 cytoplasmic stress granule IEP Predict GO terms from Neighborhoods
BP GO:0010628 positive regulation of gene expression IEP Predict GO terms from Neighborhoods
BP GO:0010721 negative regulation of cell development IEP Predict GO terms from Neighborhoods
BP GO:0010921 regulation of phosphatase activity IEP Predict GO terms from Neighborhoods
BP GO:0010922 positive regulation of phosphatase activity IEP Predict GO terms from Neighborhoods
BP GO:0010975 regulation of neuron projection development IEP Predict GO terms from Neighborhoods
BP GO:0010977 negative regulation of neuron projection development IEP Predict GO terms from Neighborhoods
CC GO:0014069 postsynaptic density IEP Predict GO terms from Neighborhoods
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0015105 arsenite transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0015144 carbohydrate transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0015166 polyol transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0015168 glycerol transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0015204 urea transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0015250 water channel activity IEP Predict GO terms from Neighborhoods
BP GO:0015700 arsenite transport IEP Predict GO terms from Neighborhoods
BP GO:0015791 polyol transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:0015793 glycerol transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:0015840 urea transport IEP Predict GO terms from Neighborhoods
BP GO:0015850 organic hydroxy compound transport IEP Predict GO terms from Neighborhoods
CC GO:0016328 lateral plasma membrane IEP Predict GO terms from Neighborhoods
MF GO:0016887 ATP hydrolysis activity IEP Predict GO terms from Neighborhoods
MF GO:0016922 nuclear receptor binding IEP Predict GO terms from Neighborhoods
BP GO:0017148 negative regulation of translation IEP Predict GO terms from Neighborhoods
BP GO:0019220 regulation of phosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019722 calcium-mediated signaling IEP Predict GO terms from Neighborhoods
BP GO:0019755 one-carbon compound transport IEP Predict GO terms from Neighborhoods
MF GO:0019902 phosphatase binding IEP Predict GO terms from Neighborhoods
MF GO:0019903 protein phosphatase binding IEP Predict GO terms from Neighborhoods
BP GO:0019932 second-messenger-mediated signaling IEP Predict GO terms from Neighborhoods
BP GO:0020027 hemoglobin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0022407 regulation of cell-cell adhesion IEP Predict GO terms from Neighborhoods
BP GO:0022408 negative regulation of cell-cell adhesion IEP Predict GO terms from Neighborhoods
BP GO:0022607 cellular component assembly IEP Predict GO terms from Neighborhoods
BP GO:0030104 water homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0030155 regulation of cell adhesion IEP Predict GO terms from Neighborhoods
BP GO:0030308 negative regulation of cell growth IEP Predict GO terms from Neighborhoods
BP GO:0030516 regulation of axon extension IEP Predict GO terms from Neighborhoods
BP GO:0030517 negative regulation of axon extension IEP Predict GO terms from Neighborhoods
BP GO:0031345 negative regulation of cell projection organization IEP Predict GO terms from Neighborhoods
BP GO:0031347 regulation of defense response IEP Predict GO terms from Neighborhoods
BP GO:0032101 regulation of response to external stimulus IEP Predict GO terms from Neighborhoods
BP GO:0032104 regulation of response to extracellular stimulus IEP Predict GO terms from Neighborhoods
BP GO:0032107 regulation of response to nutrient levels IEP Predict GO terms from Neighborhoods
BP GO:0032479 regulation of type I interferon production IEP Predict GO terms from Neighborhoods
BP GO:0032481 positive regulation of type I interferon production IEP Predict GO terms from Neighborhoods
BP GO:0032501 multicellular organismal process IEP Predict GO terms from Neighborhoods
BP GO:0032516 positive regulation of phosphoprotein phosphatase activity IEP Predict GO terms from Neighborhoods
BP GO:0032648 regulation of interferon-beta production IEP Predict GO terms from Neighborhoods
BP GO:0032728 positive regulation of interferon-beta production IEP Predict GO terms from Neighborhoods
BP GO:0034063 stress granule assembly IEP Predict GO terms from Neighborhoods
BP GO:0034219 carbohydrate transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:0034249 negative regulation of cellular amide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0034250 positive regulation of cellular amide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0034341 response to interferon-gamma IEP Predict GO terms from Neighborhoods
BP GO:0034605 cellular response to heat IEP Predict GO terms from Neighborhoods
MF GO:0035259 nuclear glucocorticoid receptor binding IEP Predict GO terms from Neighborhoods
BP GO:0035303 regulation of dephosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0035304 regulation of protein dephosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0035306 positive regulation of dephosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0035307 positive regulation of protein dephosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0035445 borate transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:0035966 response to topologically incorrect protein IEP Predict GO terms from Neighborhoods
MF GO:0036002 pre-mRNA binding IEP Predict GO terms from Neighborhoods
BP GO:0040012 regulation of locomotion IEP Predict GO terms from Neighborhoods
BP GO:0040024 dauer larval development IEP Predict GO terms from Neighborhoods
BP GO:0042026 protein refolding IEP Predict GO terms from Neighborhoods
BP GO:0042044 fluid transport IEP Predict GO terms from Neighborhoods
CC GO:0042383 sarcolemma IEP Predict GO terms from Neighborhoods
CC GO:0042470 melanosome IEP Predict GO terms from Neighborhoods
BP GO:0042541 hemoglobin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0042886 amide transport IEP Predict GO terms from Neighborhoods
MF GO:0042887 amide transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0043021 ribonucleoprotein complex binding IEP Predict GO terms from Neighborhoods
MF GO:0043022 ribosome binding IEP Predict GO terms from Neighborhoods
BP GO:0043487 regulation of RNA stability IEP Predict GO terms from Neighborhoods
BP GO:0043488 regulation of mRNA stability IEP Predict GO terms from Neighborhoods
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP Predict GO terms from Neighborhoods
BP GO:0043933 protein-containing complex organization IEP Predict GO terms from Neighborhoods
BP GO:0045088 regulation of innate immune response IEP Predict GO terms from Neighborhoods
BP GO:0045471 response to ethanol IEP Predict GO terms from Neighborhoods
BP GO:0045596 negative regulation of cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045727 positive regulation of translation IEP Predict GO terms from Neighborhoods
BP GO:0045746 negative regulation of Notch signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0045824 negative regulation of innate immune response IEP Predict GO terms from Neighborhoods
BP GO:0045948 positive regulation of translational initiation IEP Predict GO terms from Neighborhoods
BP GO:0046677 response to antibiotic IEP Predict GO terms from Neighborhoods
BP GO:0046685 response to arsenic-containing substance IEP Predict GO terms from Neighborhoods
BP GO:0046713 borate transport IEP Predict GO terms from Neighborhoods
MF GO:0046715 active borate transmembrane transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0048167 regulation of synaptic plasticity IEP Predict GO terms from Neighborhoods
BP GO:0048640 negative regulation of developmental growth IEP Predict GO terms from Neighborhoods
CC GO:0048770 pigment granule IEP Predict GO terms from Neighborhoods
BP GO:0048871 multicellular organismal homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0050684 regulation of mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0050688 regulation of defense response to virus IEP Predict GO terms from Neighborhoods
BP GO:0050691 regulation of defense response to virus by host IEP Predict GO terms from Neighborhoods
BP GO:0050767 regulation of neurogenesis IEP Predict GO terms from Neighborhoods
BP GO:0050768 negative regulation of neurogenesis IEP Predict GO terms from Neighborhoods
BP GO:0050770 regulation of axonogenesis IEP Predict GO terms from Neighborhoods
BP GO:0050771 negative regulation of axonogenesis IEP Predict GO terms from Neighborhoods
BP GO:0050776 regulation of immune response IEP Predict GO terms from Neighborhoods
BP GO:0050777 negative regulation of immune response IEP Predict GO terms from Neighborhoods
BP GO:0050779 RNA destabilization IEP Predict GO terms from Neighborhoods
BP GO:0050804 modulation of chemical synaptic transmission IEP Predict GO terms from Neighborhoods
BP GO:0050821 protein stabilization IEP Predict GO terms from Neighborhoods
BP GO:0050878 regulation of body fluid levels IEP Predict GO terms from Neighborhoods
BP GO:0050890 cognition IEP Predict GO terms from Neighborhoods
BP GO:0050891 multicellular organismal water homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0050920 regulation of chemotaxis IEP Predict GO terms from Neighborhoods
MF GO:0051082 unfolded protein binding IEP Predict GO terms from Neighborhoods
BP GO:0051131 chaperone-mediated protein complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0051168 nuclear export IEP Predict GO terms from Neighborhoods
BP GO:0051169 nuclear transport IEP Predict GO terms from Neighborhoods
BP GO:0051174 regulation of phosphorus metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0051219 phosphoprotein binding IEP Predict GO terms from Neighborhoods
BP GO:0051247 positive regulation of protein metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051260 protein homooligomerization IEP Predict GO terms from Neighborhoods
BP GO:0051262 protein tetramerization IEP Predict GO terms from Neighborhoods
BP GO:0051289 protein homotetramerization IEP Predict GO terms from Neighborhoods
BP GO:0051345 positive regulation of hydrolase activity IEP Predict GO terms from Neighborhoods
BP GO:0051592 response to calcium ion IEP Predict GO terms from Neighborhoods
BP GO:0051960 regulation of nervous system development IEP Predict GO terms from Neighborhoods
BP GO:0051961 negative regulation of nervous system development IEP Predict GO terms from Neighborhoods
BP GO:0060176 regulation of aggregation involved in sorocarp development IEP Predict GO terms from Neighborhoods
BP GO:0060232 delamination IEP Predict GO terms from Neighborhoods
BP GO:0060284 regulation of cell development IEP Predict GO terms from Neighborhoods
BP GO:0060338 regulation of type I interferon-mediated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0060339 negative regulation of type I interferon-mediated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0060759 regulation of response to cytokine stimulus IEP Predict GO terms from Neighborhoods
BP GO:0060761 negative regulation of response to cytokine stimulus IEP Predict GO terms from Neighborhoods
BP GO:0061013 regulation of mRNA catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0061014 positive regulation of mRNA catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0061077 chaperone-mediated protein folding IEP Predict GO terms from Neighborhoods
BP GO:0061157 mRNA destabilization IEP Predict GO terms from Neighborhoods
BP GO:0061387 regulation of extent of cell growth IEP Predict GO terms from Neighborhoods
MF GO:0061629 RNA polymerase II-specific DNA-binding transcription factor binding IEP Predict GO terms from Neighborhoods
MF GO:0062153 C5-methylcytidine-containing RNA binding IEP Predict GO terms from Neighborhoods
BP GO:0065003 protein-containing complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0065008 regulation of biological quality IEP Predict GO terms from Neighborhoods
BP GO:0071248 cellular response to metal ion IEP Predict GO terms from Neighborhoods
BP GO:0071277 cellular response to calcium ion IEP Predict GO terms from Neighborhoods
BP GO:0071345 cellular response to cytokine stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071346 cellular response to interferon-gamma IEP Predict GO terms from Neighborhoods
BP GO:0071425 hematopoietic stem cell proliferation IEP Predict GO terms from Neighborhoods
BP GO:0071705 nitrogen compound transport IEP Predict GO terms from Neighborhoods
BP GO:0071918 urea transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:0072089 stem cell proliferation IEP Predict GO terms from Neighborhoods
BP GO:0080029 cellular response to boron-containing substance levels IEP Predict GO terms from Neighborhoods
BP GO:0080134 regulation of response to stress IEP Predict GO terms from Neighborhoods
BP GO:0080170 hydrogen peroxide transmembrane transport IEP Predict GO terms from Neighborhoods
MF GO:0097718 disordered domain specific binding IEP Predict GO terms from Neighborhoods
BP GO:0098508 endothelial to hematopoietic transition IEP Predict GO terms from Neighborhoods
CC GO:0098552 side of membrane IEP Predict GO terms from Neighborhoods
BP GO:0098586 cellular response to virus IEP Predict GO terms from Neighborhoods
BP GO:0098661 inorganic anion transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:0099177 regulation of trans-synaptic signaling IEP Predict GO terms from Neighborhoods
CC GO:0099572 postsynaptic specialization IEP Predict GO terms from Neighborhoods
BP GO:1900271 regulation of long-term synaptic potentiation IEP Predict GO terms from Neighborhoods
BP GO:1901163 regulation of trophoblast cell migration IEP Predict GO terms from Neighborhoods
BP GO:1901532 regulation of hematopoietic progenitor cell differentiation IEP Predict GO terms from Neighborhoods
MF GO:1901618 organic hydroxy compound transmembrane transporter activity IEP Predict GO terms from Neighborhoods
BP GO:1902036 regulation of hematopoietic stem cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:1902667 regulation of axon guidance IEP Predict GO terms from Neighborhoods
BP GO:1903313 positive regulation of mRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903538 regulation of meiotic cell cycle process involved in oocyte maturation IEP Predict GO terms from Neighborhoods
MF GO:1990247 N6-methyladenosine-containing RNA binding IEP Predict GO terms from Neighborhoods
MF GO:1990634 protein phosphatase 5 binding IEP Predict GO terms from Neighborhoods
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:2000736 regulation of stem cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:2000737 negative regulation of stem cell differentiation IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR016082 Ribosomal_L30_ferredoxin-like 88 138
IPR036919 L30_ferredoxin-like_sf 87 246
IPR005998 Ribosomal_L7_euk 13 246
IPR012988 Ribosomal_L30_N 13 74
No external refs found!