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  5. SOLTUB.AGRIA.G00000012554

SOLTUB.AGRIA.G00000012554


Description : Ribosomal protein S24/S35


Gene families : OG_02_0013915 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000012554
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_65


Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA AHRD
CC GO:0005739 mitochondrion IEA AHRD
CC GO:0005763 mitochondrial small ribosomal subunit IEA AHRD
CC GO:0005840 ribosome IEA AHRD
BP GO:0008150 biological_process IEA AHRD
BP GO:0032543 mitochondrial translation IEA AHRD
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Type GO Term Name Evidence Source
BP GO:0000027 ribosomal large subunit assembly IEP Predict GO terms from Neighborhoods
CC GO:0000315 organellar large ribosomal subunit IEP Predict GO terms from Neighborhoods
BP GO:0000373 Group II intron splicing IEP Predict GO terms from Neighborhoods
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Predict GO terms from Neighborhoods
BP GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predict GO terms from Neighborhoods
BP GO:0000472 endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predict GO terms from Neighborhoods
BP GO:0000480 endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predict GO terms from Neighborhoods
BP GO:0000741 karyogamy IEP Predict GO terms from Neighborhoods
CC GO:0000785 chromatin IEP Predict GO terms from Neighborhoods
BP GO:0000959 mitochondrial RNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0000966 RNA 5'-end processing IEP Predict GO terms from Neighborhoods
BP GO:0000967 rRNA 5'-end processing IEP Predict GO terms from Neighborhoods
BP GO:0001558 regulation of cell growth IEP Predict GO terms from Neighborhoods
BP GO:0001560 regulation of cell growth by extracellular stimulus IEP Predict GO terms from Neighborhoods
BP GO:0001732 formation of cytoplasmic translation initiation complex IEP Predict GO terms from Neighborhoods
BP GO:0001893 maternal placenta development IEP Predict GO terms from Neighborhoods
BP GO:0002939 tRNA N1-guanine methylation IEP Predict GO terms from Neighborhoods
MF GO:0003676 nucleic acid binding IEP Predict GO terms from Neighborhoods
MF GO:0003723 RNA binding IEP Predict GO terms from Neighborhoods
MF GO:0003729 mRNA binding IEP Predict GO terms from Neighborhoods
MF GO:0003743 translation initiation factor activity IEP Predict GO terms from Neighborhoods
MF GO:0003746 translation elongation factor activity IEP Predict GO terms from Neighborhoods
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predict GO terms from Neighborhoods
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP Predict GO terms from Neighborhoods
MF GO:0003872 6-phosphofructokinase activity IEP Predict GO terms from Neighborhoods
MF GO:0005080 protein kinase C binding IEP Predict GO terms from Neighborhoods
MF GO:0005488 binding IEP Predict GO terms from Neighborhoods
MF GO:0005527 macrolide binding IEP Predict GO terms from Neighborhoods
MF GO:0005528 FK506 binding IEP Predict GO terms from Neighborhoods
CC GO:0005703 polytene chromosome puff IEP Predict GO terms from Neighborhoods
CC GO:0005730 nucleolus IEP Predict GO terms from Neighborhoods
CC GO:0005762 mitochondrial large ribosomal subunit IEP Predict GO terms from Neighborhoods
CC GO:0005832 chaperonin-containing T-complex IEP Predict GO terms from Neighborhoods
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predict GO terms from Neighborhoods
BP GO:0006002 fructose 6-phosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006334 nucleosome assembly IEP Predict GO terms from Neighborhoods
BP GO:0006337 nucleosome disassembly IEP Predict GO terms from Neighborhoods
BP GO:0006338 chromatin remodeling IEP Predict GO terms from Neighborhoods
BP GO:0006364 rRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0006379 mRNA cleavage IEP Predict GO terms from Neighborhoods
BP GO:0006396 RNA processing IEP Predict GO terms from Neighborhoods
BP GO:0006403 RNA localization IEP Predict GO terms from Neighborhoods
BP GO:0006417 regulation of translation IEP Predict GO terms from Neighborhoods
BP GO:0006491 N-glycan processing IEP Predict GO terms from Neighborhoods
BP GO:0006573 valine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006574 valine catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006725 cellular aromatic compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006997 nucleus organization IEP Predict GO terms from Neighborhoods
BP GO:0007276 gamete generation IEP Predict GO terms from Neighborhoods
BP GO:0007316 pole plasm RNA localization IEP Predict GO terms from Neighborhoods
BP GO:0007319 negative regulation of oskar mRNA translation IEP Predict GO terms from Neighborhoods
BP GO:0007339 binding of sperm to zona pellucida IEP Predict GO terms from Neighborhoods
BP GO:0007444 imaginal disc development IEP Predict GO terms from Neighborhoods
BP GO:0008069 dorsal/ventral axis specification, ovarian follicular epithelium IEP Predict GO terms from Neighborhoods
MF GO:0008135 translation factor activity, RNA binding IEP Predict GO terms from Neighborhoods
BP GO:0008156 negative regulation of DNA replication IEP Predict GO terms from Neighborhoods
MF GO:0008175 tRNA methyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0008298 intracellular mRNA localization IEP Predict GO terms from Neighborhoods
MF GO:0008443 phosphofructokinase activity IEP Predict GO terms from Neighborhoods
MF GO:0009019 tRNA (guanine-N1-)-methyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0009083 branched-chain amino acid catabolic process IEP Predict GO terms from Neighborhoods
CC GO:0009532 plastid stroma IEP Predict GO terms from Neighborhoods
BP GO:0009561 megagametogenesis IEP Predict GO terms from Neighborhoods
CC GO:0009579 thylakoid IEP Predict GO terms from Neighborhoods
BP GO:0009790 embryo development IEP Predict GO terms from Neighborhoods
BP GO:0009847 spore germination IEP Predict GO terms from Neighborhoods
BP GO:0009950 dorsal/ventral axis specification IEP Predict GO terms from Neighborhoods
BP GO:0009988 cell-cell recognition IEP Predict GO terms from Neighborhoods
BP GO:0010197 polar nucleus fusion IEP Predict GO terms from Neighborhoods
BP GO:0010467 gene expression IEP Predict GO terms from Neighborhoods
BP GO:0010507 negative regulation of autophagy IEP Predict GO terms from Neighborhoods
BP GO:0010608 post-transcriptional regulation of gene expression IEP Predict GO terms from Neighborhoods
BP GO:0010960 magnesium ion homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0010977 negative regulation of neuron projection development IEP Predict GO terms from Neighborhoods
BP GO:0016043 cellular component organization IEP Predict GO terms from Neighborhoods
BP GO:0016070 RNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016071 mRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016072 rRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016242 negative regulation of macroautophagy IEP Predict GO terms from Neighborhoods
CC GO:0016282 eukaryotic 43S preinitiation complex IEP Predict GO terms from Neighborhoods
MF GO:0016289 CoA hydrolase activity IEP Predict GO terms from Neighborhoods
BP GO:0016325 oocyte microtubule cytoskeleton organization IEP Predict GO terms from Neighborhoods
BP GO:0016334 establishment or maintenance of polarity of follicular epithelium IEP Predict GO terms from Neighborhoods
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0016444 somatic cell DNA recombination IEP Predict GO terms from Neighborhoods
BP GO:0017004 cytochrome complex assembly IEP Predict GO terms from Neighborhoods
CC GO:0017177 glucosidase II complex IEP Predict GO terms from Neighborhoods
BP GO:0019094 pole plasm mRNA localization IEP Predict GO terms from Neighborhoods
MF GO:0019200 carbohydrate kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0019843 rRNA binding IEP Predict GO terms from Neighborhoods
BP GO:0022607 cellular component assembly IEP Predict GO terms from Neighborhoods
BP GO:0022618 ribonucleoprotein complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0030488 tRNA methylation IEP Predict GO terms from Neighborhoods
CC GO:0030684 preribosome IEP Predict GO terms from Neighborhoods
CC GO:0030687 preribosome, large subunit precursor IEP Predict GO terms from Neighborhoods
CC GO:0030689 Noc complex IEP Predict GO terms from Neighborhoods
CC GO:0030692 Noc4p-Nop14p complex IEP Predict GO terms from Neighborhoods
BP GO:0030720 oocyte localization involved in germarium-derived egg chamber formation IEP Predict GO terms from Neighborhoods
BP GO:0030951 establishment or maintenance of microtubule cytoskeleton polarity IEP Predict GO terms from Neighborhoods
BP GO:0030952 establishment or maintenance of cytoskeleton polarity IEP Predict GO terms from Neighborhoods
MF GO:0031369 translation initiation factor binding IEP Predict GO terms from Neighborhoods
MF GO:0031681 G-protein beta-subunit binding IEP Predict GO terms from Neighborhoods
CC GO:0032040 small-subunit processome IEP Predict GO terms from Neighborhoods
BP GO:0032206 positive regulation of telomere maintenance IEP Predict GO terms from Neighborhoods
BP GO:0032210 regulation of telomere maintenance via telomerase IEP Predict GO terms from Neighborhoods
BP GO:0032212 positive regulation of telomere maintenance via telomerase IEP Predict GO terms from Neighborhoods
BP GO:0032986 protein-DNA complex disassembly IEP Predict GO terms from Neighborhoods
BP GO:0033119 negative regulation of RNA splicing IEP Predict GO terms from Neighborhoods
CC GO:0033290 eukaryotic 48S preinitiation complex IEP Predict GO terms from Neighborhoods
MF GO:0034046 poly(G) binding IEP Predict GO terms from Neighborhoods
BP GO:0034248 regulation of cellular amide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0034250 positive regulation of cellular amide metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0034388 Pwp2p-containing subcomplex of 90S preribosome IEP Predict GO terms from Neighborhoods
BP GO:0034470 ncRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0034471 ncRNA 5'-end processing IEP Predict GO terms from Neighborhoods
BP GO:0034660 ncRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0034728 nucleosome organization IEP Predict GO terms from Neighborhoods
BP GO:0035036 sperm-egg recognition IEP Predict GO terms from Neighborhoods
CC GO:0035062 omega speckle IEP Predict GO terms from Neighborhoods
MF GO:0035613 RNA stem-loop binding IEP Predict GO terms from Neighborhoods
BP GO:0035626 juvenile hormone mediated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0036260 RNA capping IEP Predict GO terms from Neighborhoods
MF GO:0042393 histone binding IEP Predict GO terms from Neighborhoods
CC GO:0043186 P granule IEP Predict GO terms from Neighborhoods
BP GO:0043933 protein-containing complex organization IEP Predict GO terms from Neighborhoods
MF GO:0045182 translation regulator activity IEP Predict GO terms from Neighborhoods
BP GO:0045446 endothelial cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045451 pole plasm oskar mRNA localization IEP Predict GO terms from Neighborhoods
BP GO:0045727 positive regulation of translation IEP Predict GO terms from Neighborhoods
BP GO:0046011 regulation of oskar mRNA translation IEP Predict GO terms from Neighborhoods
BP GO:0046483 heterocycle metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046686 response to cadmium ion IEP Predict GO terms from Neighborhoods
BP GO:0046835 carbohydrate phosphorylation IEP Predict GO terms from Neighborhoods
MF GO:0047334 diphosphate-fructose-6-phosphate 1-phosphotransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0048027 mRNA 5'-UTR binding IEP Predict GO terms from Neighborhoods
BP GO:0048284 organelle fusion IEP Predict GO terms from Neighborhoods
MF GO:0048487 beta-tubulin binding IEP Predict GO terms from Neighborhoods
BP GO:0048864 stem cell development IEP Predict GO terms from Neighborhoods
BP GO:0051128 regulation of cellular component organization IEP Predict GO terms from Neighborhoods
MF GO:0051219 phosphoprotein binding IEP Predict GO terms from Neighborhoods
BP GO:0051674 localization of cell IEP Predict GO terms from Neighborhoods
MF GO:0052905 tRNA (guanine(9)-N(1))-methyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0060135 maternal process involved in female pregnancy IEP Predict GO terms from Neighborhoods
BP GO:0060810 intracellular mRNA localization involved in pattern specification process IEP Predict GO terms from Neighborhoods
BP GO:0060811 intracellular mRNA localization involved in anterior/posterior axis specification IEP Predict GO terms from Neighborhoods
BP GO:0061615 glycolytic process through fructose-6-phosphate IEP Predict GO terms from Neighborhoods
BP GO:0065003 protein-containing complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0065004 protein-DNA complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0070125 mitochondrial translational elongation IEP Predict GO terms from Neighborhoods
BP GO:0070202 regulation of establishment of protein localization to chromosome IEP Predict GO terms from Neighborhoods
BP GO:0070203 regulation of establishment of protein localization to telomere IEP Predict GO terms from Neighborhoods
MF GO:0070594 juvenile hormone response element binding IEP Predict GO terms from Neighborhoods
CC GO:0070993 translation preinitiation complex IEP Predict GO terms from Neighborhoods
CC GO:0071540 eukaryotic translation initiation factor 3 complex, eIF3e IEP Predict GO terms from Neighborhoods
CC GO:0071541 eukaryotic translation initiation factor 3 complex, eIF3m IEP Predict GO terms from Neighborhoods
BP GO:0071824 protein-DNA complex subunit organization IEP Predict GO terms from Neighborhoods
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predict GO terms from Neighborhoods
BP GO:0071840 cellular component organization or biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0072396 response to cell cycle checkpoint signaling IEP Predict GO terms from Neighborhoods
BP GO:0072402 response to DNA integrity checkpoint signaling IEP Predict GO terms from Neighborhoods
BP GO:0072423 response to DNA damage checkpoint signaling IEP Predict GO terms from Neighborhoods
BP GO:0075522 IRES-dependent viral translational initiation IEP Predict GO terms from Neighborhoods
BP GO:0075525 viral translational termination-reinitiation IEP Predict GO terms from Neighborhoods
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Predict GO terms from Neighborhoods
BP GO:0090304 nucleic acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Predict GO terms from Neighborhoods
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP Predict GO terms from Neighborhoods
MF GO:0097159 organic cyclic compound binding IEP Predict GO terms from Neighborhoods
BP GO:0098787 mRNA cleavage involved in mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0098789 pre-mRNA cleavage required for polyadenylation IEP Predict GO terms from Neighborhoods
CC GO:0101031 chaperone complex IEP Predict GO terms from Neighborhoods
BP GO:1901360 organic cyclic compound metabolic process IEP Predict GO terms from Neighborhoods
MF GO:1901363 heterocyclic compound binding IEP Predict GO terms from Neighborhoods
BP GO:1901998 toxin transport IEP Predict GO terms from Neighborhoods
BP GO:1903684 regulation of border follicle cell migration IEP Predict GO terms from Neighborhoods
BP GO:1903688 positive regulation of border follicle cell migration IEP Predict GO terms from Neighborhoods
BP GO:1904356 regulation of telomere maintenance via telomere lengthening IEP Predict GO terms from Neighborhoods
BP GO:1904358 positive regulation of telomere maintenance via telomere lengthening IEP Predict GO terms from Neighborhoods
BP GO:1904814 regulation of protein localization to chromosome, telomeric region IEP Predict GO terms from Neighborhoods
BP GO:1904816 positive regulation of protein localization to chromosome, telomeric region IEP Predict GO terms from Neighborhoods
BP GO:1904851 positive regulation of establishment of protein localization to telomere IEP Predict GO terms from Neighborhoods
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR019349 Ribosomal_S24/S35_mit 321 409
No external refs found!