SOLTUB.AGRIA.G00000012596

Description : LOB domain protein 40

Gene families : OG_02_0013927 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000012596
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_32

Type	GO Term	Name	Evidence	Source
MF	GO:0000976	transcription cis-regulatory region binding	IEA	AHRD
MF	GO:0001067	transcription regulatory region nucleic acid binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
BP	GO:0006355	regulation of DNA-templated transcription	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009739	response to gibberellin	IEA	AHRD
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009965	leaf morphogenesis	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0042221	response to chemical	None	Extended
MF	GO:0043565	sequence-specific DNA binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0060776	simple leaf morphogenesis	IEA	AHRD
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1905392	plant organ morphogenesis	None	Extended
MF	GO:1990837	sequence-specific double-stranded DNA binding	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000306	extrinsic component of vacuolar membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0000819	sister chromatid segregation	IEP	Predict GO terms from Neighborhoods
BP	GO:0001666	response to hypoxia	IEP	Predict GO terms from Neighborhoods
BP	GO:0001778	plasma membrane repair	IEP	Predict GO terms from Neighborhoods
BP	GO:0001909	leukocyte mediated cytotoxicity	IEP	Predict GO terms from Neighborhoods
BP	GO:0002228	natural killer cell mediated immunity	IEP	Predict GO terms from Neighborhoods
BP	GO:0002443	leukocyte mediated immunity	IEP	Predict GO terms from Neighborhoods
BP	GO:0002449	lymphocyte mediated immunity	IEP	Predict GO terms from Neighborhoods
BP	GO:0002504	antigen processing and presentation of peptide or polysaccharide antigen via MHC class II	IEP	Predict GO terms from Neighborhoods
BP	GO:0002505	antigen processing and presentation of polysaccharide antigen via MHC class II	IEP	Predict GO terms from Neighborhoods
BP	GO:0002747	antigen processing and presentation following phagocytosis	IEP	Predict GO terms from Neighborhoods
BP	GO:0003032	detection of oxygen	IEP	Predict GO terms from Neighborhoods
MF	GO:0003925	G protein activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004430	1-phosphatidylinositol 4-kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004656	procollagen-proline 4-dioxygenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005506	iron ion binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0005802	trans-Golgi network	IEP	Predict GO terms from Neighborhoods
BP	GO:0006836	neurotransmitter transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0007009	plasma membrane organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007269	neurotransmitter secretion	IEP	Predict GO terms from Neighborhoods
BP	GO:0007431	salivary gland development	IEP	Predict GO terms from Neighborhoods
BP	GO:0007444	imaginal disc development	IEP	Predict GO terms from Neighborhoods
BP	GO:0008089	anterograde axonal transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0009061	anaerobic respiration	IEP	Predict GO terms from Neighborhoods
BP	GO:0009593	detection of chemical stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0010288	response to lead ion	IEP	Predict GO terms from Neighborhoods
BP	GO:0010966	regulation of phosphate transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015692	lead ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015980	energy derivation by oxidation of organic compounds	IEP	Predict GO terms from Neighborhoods
MF	GO:0016491	oxidoreductase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016701	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	IEP	Predict GO terms from Neighborhoods
MF	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	IEP	Predict GO terms from Neighborhoods
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Predict GO terms from Neighborhoods
MF	GO:0016706	2-oxoglutarate-dependent dioxygenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016713	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen	IEP	Predict GO terms from Neighborhoods
BP	GO:0017156	calcium-ion regulated exocytosis	IEP	Predict GO terms from Neighborhoods
BP	GO:0018126	protein hydroxylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0018158	protein oxidation	IEP	Predict GO terms from Neighborhoods
BP	GO:0018171	peptidyl-cysteine oxidation	IEP	Predict GO terms from Neighborhoods
BP	GO:0018193	peptidyl-amino acid modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0018198	peptidyl-cysteine modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0018208	peptidyl-proline modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0018401	peptidyl-proline hydroxylation to 4-hydroxy-L-proline	IEP	Predict GO terms from Neighborhoods
MF	GO:0018685	alkane 1-monooxygenase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0019076	viral release from host cell	IEP	Predict GO terms from Neighborhoods
BP	GO:0019511	peptidyl-proline hydroxylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0019798	procollagen-proline dioxygenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0019842	vitamin binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0019882	antigen processing and presentation	IEP	Predict GO terms from Neighborhoods
MF	GO:0030246	carbohydrate binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0030301	cholesterol transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0031406	carboxylic acid binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0031418	L-ascorbic acid binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0031543	peptidyl-proline dioxygenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0031545	peptidyl-proline 4-dioxygenase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0031984	organelle subcompartment	IEP	Predict GO terms from Neighborhoods
BP	GO:0032365	intracellular lipid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0032366	intracellular sterol transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0032367	intracellular cholesterol transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0032418	lysosome localization	IEP	Predict GO terms from Neighborhoods
CC	GO:0032419	extrinsic component of lysosome membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0032838	plasma membrane bounded cell projection cytoplasm	IEP	Predict GO terms from Neighborhoods
BP	GO:0033227	dsRNA transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0033363	secretory granule organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0034051	negative regulation of plant-type hypersensitive response	IEP	Predict GO terms from Neighborhoods
BP	GO:0034052	positive regulation of plant-type hypersensitive response	IEP	Predict GO terms from Neighborhoods
BP	GO:0034067	protein localization to Golgi apparatus	IEP	Predict GO terms from Neighborhoods
BP	GO:0035220	wing disc development	IEP	Predict GO terms from Neighborhoods
BP	GO:0035336	long-chain fatty-acyl-CoA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0035891	exit from host cell	IEP	Predict GO terms from Neighborhoods
BP	GO:0036211	protein modification process	IEP	Predict GO terms from Neighborhoods
BP	GO:0036293	response to decreased oxygen levels	IEP	Predict GO terms from Neighborhoods
BP	GO:0040002	collagen and cuticulin-based cuticle development	IEP	Predict GO terms from Neighborhoods
BP	GO:0042267	natural killer cell mediated cytotoxicity	IEP	Predict GO terms from Neighborhoods
MF	GO:0043014	alpha-tubulin binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0043169	cation binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0043177	organic acid binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0043195	terminal bouton	IEP	Predict GO terms from Neighborhoods
CC	GO:0043204	perikaryon	IEP	Predict GO terms from Neighborhoods
BP	GO:0043412	macromolecule modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0045055	regulated exocytosis	IEP	Predict GO terms from Neighborhoods
BP	GO:0045333	cellular respiration	IEP	Predict GO terms from Neighborhoods
BP	GO:0046753	non-lytic viral release	IEP	Predict GO terms from Neighborhoods
BP	GO:0046754	viral exocytosis	IEP	Predict GO terms from Neighborhoods
BP	GO:0046854	phosphatidylinositol phosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0046872	metal ion binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0046914	transition metal ion binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0046937	phytochelatin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046938	phytochelatin biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0048029	monosaccharide binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0048468	cell development	IEP	Predict GO terms from Neighborhoods
MF	GO:0048487	beta-tubulin binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0051213	dioxygenase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0051233	spindle midzone	IEP	Predict GO terms from Neighborhoods
MF	GO:0052694	jasmonoyl-isoleucine-12-hydroxylase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0052742	phosphatidylinositol kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0060628	regulation of ER to Golgi vesicle-mediated transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0061630	ubiquitin protein ligase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0061659	ubiquitin-like protein ligase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0061909	autophagosome-lysosome fusion	IEP	Predict GO terms from Neighborhoods
BP	GO:0070482	response to oxygen levels	IEP	Predict GO terms from Neighborhoods
BP	GO:0070483	detection of hypoxia	IEP	Predict GO terms from Neighborhoods
BP	GO:0070861	regulation of protein exit from endoplasmic reticulum	IEP	Predict GO terms from Neighborhoods
BP	GO:0071284	cellular response to lead ion	IEP	Predict GO terms from Neighborhoods
BP	GO:0080141	regulation of jasmonic acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0080147	root hair cell development	IEP	Predict GO terms from Neighborhoods
BP	GO:0090117	endosome to lysosome transport of low-density lipoprotein particle	IEP	Predict GO terms from Neighborhoods
BP	GO:0090119	vesicle-mediated cholesterol transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0090158	endoplasmic reticulum membrane organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0090322	regulation of superoxide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0090385	phagosome-lysosome fusion	IEP	Predict GO terms from Neighborhoods
CC	GO:0098791	Golgi apparatus subcompartment	IEP	Predict GO terms from Neighborhoods
BP	GO:0098930	axonal transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0099054	presynapse assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0099172	presynapse organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0099643	signal release from synapse	IEP	Predict GO terms from Neighborhoods
CC	GO:0101004	cytolytic granule membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0120111	neuron projection cytoplasm	IEP	Predict GO terms from Neighborhoods
BP	GO:1900407	regulation of cellular response to oxidative stress	IEP	Predict GO terms from Neighborhoods
BP	GO:1901031	regulation of response to reactive oxygen species	IEP	Predict GO terms from Neighborhoods
BP	GO:1902774	late endosome to lysosome transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1903292	protein localization to Golgi membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:1904115	axon cytoplasm	IEP	Predict GO terms from Neighborhoods
CC	GO:1990027	S bouton	IEP	Predict GO terms from Neighborhoods
BP	GO:1990849	vacuolar localization	IEP	Predict GO terms from Neighborhoods
BP	GO:1990927	calcium ion regulated lysosome exocytosis	IEP	Predict GO terms from Neighborhoods
BP	GO:2000121	regulation of removal of superoxide radicals	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR004883	LOB	4	102

External Links

No external refs found!

SOLTUB.AGRIA.G00000012596

Expression Profile

Co-expression Networks

Functional Annotation