SOLTUB.AGRIA.G00000012912

Description : demeter-like protein 3

Gene families : OG_02_0005827 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000012912
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_46

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003906	DNA-(apurinic or apyrimidinic site) endonuclease activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	IEA	AHRD
BP	GO:0006304	DNA modification	None	Extended
BP	GO:0006305	DNA alkylation	None	Extended
BP	GO:0006306	DNA methylation	IEA	AHRD
BP	GO:0006349	regulation of gene expression by genomic imprinting	IEA	AHRD
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009620	response to fungus	None	Extended
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009793	embryo development ending in seed dormancy	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010216	maintenance of DNA methylation	IEA	AHRD
BP	GO:0010468	regulation of gene expression	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
MF	GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	None	Extended
MF	GO:0019104	DNA N-glycosylase activity	IEA	AHRD
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031936	obsolete negative regulation of chromatin silencing	IEA	AHRD
BP	GO:0032259	methylation	None	Extended
MF	GO:0032451	demethylase activity	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0035510	DNA dealkylation	None	Extended
MF	GO:0035514	DNA demethylase activity	None	Extended
BP	GO:0040029	epigenetic regulation of gene expression	None	Extended
CC	GO:0043076	megasporocyte nucleus	None	Extended
CC	GO:0043078	polar nucleus	IEA	AHRD
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0044728	DNA methylation or demethylation	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048229	gametophyte development	IEA	AHRD
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050832	defense response to fungus	IEA	AHRD
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
MF	GO:0051747	cytosine C-5 DNA demethylase activity	IEA	AHRD
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070988	demethylation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080111	DNA demethylation	IEA	AHRD
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000018	regulation of DNA recombination	IEP	Predict GO terms from Neighborhoods
BP	GO:0000278	mitotic cell cycle	IEP	Predict GO terms from Neighborhoods
MF	GO:0001216	DNA-binding transcription activator activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	IEP	Predict GO terms from Neighborhoods
MF	GO:0004477	methenyltetrahydrofolate cyclohydrolase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004486	methylenetetrahydrofolate dehydrogenase [NAD(P)+] activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004488	methylenetetrahydrofolate dehydrogenase (NADP+) activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005730	nucleolus	IEP	Predict GO terms from Neighborhoods
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006691	leukotriene metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006692	prostanoid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006693	prostaglandin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006730	one-carbon metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006760	folic acid-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009853	photorespiration	IEP	Predict GO terms from Neighborhoods
BP	GO:0009934	regulation of meristem structural organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0010252	auxin homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0016584	obsolete nucleosome positioning	IEP	Predict GO terms from Neighborhoods
MF	GO:0016628	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	IEP	Predict GO terms from Neighborhoods
MF	GO:0016645	oxidoreductase activity, acting on the CH-NH group of donors	IEP	Predict GO terms from Neighborhoods
MF	GO:0016646	oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor	IEP	Predict GO terms from Neighborhoods
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	Predict GO terms from Neighborhoods
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	IEP	Predict GO terms from Neighborhoods
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0019238	cyclohydrolase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0030261	chromosome condensation	IEP	Predict GO terms from Neighborhoods
MF	GO:0031490	chromatin DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0031491	nucleosome binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0031492	nucleosomal DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0032440	2-alkenal reductase [NAD(P)+] activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0033559	unsaturated fatty acid metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0035798	2-alkenal reductase (NADP+) activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0035999	tetrahydrofolate interconversion	IEP	Predict GO terms from Neighborhoods
BP	GO:0036102	leukotriene B4 metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0036132	13-prostaglandin reductase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0036185	13-lipoxin reductase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043094	cellular metabolic compound salvage	IEP	Predict GO terms from Neighborhoods
BP	GO:0044030	regulation of DNA methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045910	negative regulation of DNA recombination	IEP	Predict GO terms from Neighborhoods
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046653	tetrahydrofolate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048825	cotyledon development	IEP	Predict GO terms from Neighborhoods
MF	GO:0050661	NADP binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051052	regulation of DNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051053	negative regulation of DNA metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0052579	(+)-pulegone reductase, (+)-isomenthone as substrate, activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0052580	(+)-pulegone reductase, (-)-menthone as substrate, activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0070402	NADPH binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0097257	leukotriene B4 12-hydroxy dehydrogenase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0097327	response to antineoplastic agent	IEP	Predict GO terms from Neighborhoods
BP	GO:1901568	fatty acid derivative metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1905177	tracheary element differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:2000014	regulation of endosperm development	IEP	Predict GO terms from Neighborhoods
BP	GO:2000241	regulation of reproductive process	IEP	Predict GO terms from Neighborhoods
BP	GO:2001300	lipoxin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2001302	lipoxin A4 metabolic process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR028925	RRM_DME	1327	1427
IPR011257	DNA_glycosylase	757	1111

External Links

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SOLTUB.AGRIA.G00000012912

Expression Profile

Co-expression Networks

Functional Annotation