SOLTUB.AGRIA.G00000013236

Description : PHD finger protein family

Gene families : OG_02_0008796 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000013236
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_114

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	AHRD
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006996	organelle organization	IEA	AHRD
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009555	pollen development	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043229	intracellular organelle	IEA	AHRD
BP	GO:0048229	gametophyte development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	IEA	AHRD
BP	GO:0051704	obsolete multi-organism process	IEA	AHRD
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903046	meiotic cell cycle process	IEA	AHRD

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0001650	fibrillar center	IEP	Predict GO terms from Neighborhoods
CC	GO:0001750	photoreceptor outer segment	IEP	Predict GO terms from Neighborhoods
CC	GO:0001917	photoreceptor inner segment	IEP	Predict GO terms from Neighborhoods
BP	GO:0002103	endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	IEP	Predict GO terms from Neighborhoods
MF	GO:0004557	alpha-galactosidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004693	cyclin-dependent protein serine/threonine kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004707	MAP kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005049	nuclear export signal receptor activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005643	nuclear pore	IEP	Predict GO terms from Neighborhoods
CC	GO:0005930	axoneme	IEP	Predict GO terms from Neighborhoods
BP	GO:0006029	proteoglycan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006493	protein O-linked glycosylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006497	protein lipidation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006611	protein export from nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0006886	intracellular protein transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0008104	protein localization	IEP	Predict GO terms from Neighborhoods
MF	GO:0008378	galactosyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009313	oligosaccharide catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010384	cell wall proteoglycan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010404	cell wall hydroxyproline-rich glycoprotein metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010405	arabinogalactan protein metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0015031	protein transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0015925	galactosidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016409	palmitoyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016417	S-acyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0018198	peptidyl-cysteine modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0018230	peptidyl-L-cysteine S-palmitoylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0018231	peptidyl-S-diacylglycerol-L-cysteine biosynthetic process from peptidyl-cysteine	IEP	Predict GO terms from Neighborhoods
BP	GO:0018258	protein O-linked glycosylation via hydroxyproline	IEP	Predict GO terms from Neighborhoods
BP	GO:0018345	protein palmitoylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0019706	protein-cysteine S-palmitoyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0019707	protein-cysteine S-acyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0030150	protein import into mitochondrial matrix	IEP	Predict GO terms from Neighborhoods
BP	GO:0031345	negative regulation of cell projection organization	IEP	Predict GO terms from Neighborhoods
CC	GO:0031514	motile cilium	IEP	Predict GO terms from Neighborhoods
CC	GO:0032391	photoreceptor connecting cilium	IEP	Predict GO terms from Neighborhoods
BP	GO:0033036	macromolecule localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0033530	raffinose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034484	raffinose catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0035720	intraciliary anterograde transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0035721	intraciliary retrograde transport	IEP	Predict GO terms from Neighborhoods
CC	GO:0035869	ciliary transition zone	IEP	Predict GO terms from Neighborhoods
CC	GO:0036064	ciliary basal body	IEP	Predict GO terms from Neighborhoods
BP	GO:0042073	intraciliary transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0044743	protein transmembrane import into intracellular organelle	IEP	Predict GO terms from Neighborhoods
BP	GO:0045184	establishment of protein localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0045494	photoreceptor cell maintenance	IEP	Predict GO terms from Neighborhoods
BP	GO:0045724	positive regulation of cilium assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0046907	intracellular transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0047274	galactinol-sucrose galactosyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0048531	beta-1,3-galactosyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051649	establishment of localization in cell	IEP	Predict GO terms from Neighborhoods
MF	GO:0052692	raffinose alpha-galactosidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0060491	regulation of cell projection assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0070727	cellular macromolecule localization	IEP	Predict GO terms from Neighborhoods
CC	GO:0097255	R2TP complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0097472	cyclin-dependent protein kinase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0097542	ciliary tip	IEP	Predict GO terms from Neighborhoods
CC	GO:0097546	ciliary base	IEP	Predict GO terms from Neighborhoods
BP	GO:0120032	regulation of plasma membrane bounded cell projection assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0120033	negative regulation of plasma membrane bounded cell projection assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0120034	positive regulation of plasma membrane bounded cell projection assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0140104	molecular carrier activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0140142	nucleocytoplasmic carrier activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1902017	regulation of cilium assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:1902018	negative regulation of cilium assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:1902116	negative regulation of organelle assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:1902117	positive regulation of organelle assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:1902855	regulation of non-motile cilium assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:1902856	negative regulation of non-motile cilium assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:1902857	positive regulation of non-motile cilium assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:1990714	hydroxyproline O-galactosyltransferase activity	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR019787	Znf_PHD-finger	630	676
IPR011011	Znf_FYVE_PHD	616	675

External Links

No external refs found!

SOLTUB.AGRIA.G00000013236

Expression Profile

Co-expression Networks

Functional Annotation