SOLTUB.AGRIA.G00000013394

Description : HMG-Y-related A

Gene families : OG_02_0014036 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000013394
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_46

Type	GO Term	Name	Evidence	Source
BP	GO:0000018	regulation of DNA recombination	None	Extended
CC	GO:0000785	chromatin	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003682	chromatin binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	IEA	AHRD
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005730	nucleolus	IEA	AHRD
CC	GO:0005829	cytosol	IEA	AHRD
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016584	obsolete nucleosome positioning	IEA	AHRD
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0030261	chromosome condensation	IEA	AHRD
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
MF	GO:0031490	chromatin DNA binding	None	Extended
MF	GO:0031491	nucleosome binding	None	Extended
MF	GO:0031492	nucleosomal DNA binding	IEA	AHRD
BP	GO:0031936	obsolete negative regulation of chromatin silencing	IEA	AHRD
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	AHRD
MF	GO:0044877	protein-containing complex binding	None	Extended
BP	GO:0045910	negative regulation of DNA recombination	IEA	AHRD
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051052	regulation of DNA metabolic process	None	Extended
BP	GO:0051053	negative regulation of DNA metabolic process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:2000014	regulation of endosperm development	IEA	AHRD
BP	GO:2000241	regulation of reproductive process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000228	nuclear chromosome	IEP	Predict GO terms from Neighborhoods
MF	GO:0000293	ferric-chelate reductase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0000786	nucleosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0001503	ossification	IEP	Predict GO terms from Neighborhoods
MF	GO:0003906	DNA-(apurinic or apyrimidinic site) endonuclease activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005622	intracellular anatomical structure	IEP	Predict GO terms from Neighborhoods
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006304	DNA modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0006305	DNA alkylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006306	DNA methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006325	chromatin organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0006334	nucleosome assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0006335	DNA replication-dependent chromatin assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0006349	regulation of gene expression by genomic imprinting	IEP	Predict GO terms from Neighborhoods
BP	GO:0006352	DNA-templated transcription initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006879	cellular iron ion homeostasis	IEP	Predict GO terms from Neighborhoods
CC	GO:0009507	chloroplast	IEP	Predict GO terms from Neighborhoods
CC	GO:0009536	plastid	IEP	Predict GO terms from Neighborhoods
CC	GO:0009579	thylakoid	IEP	Predict GO terms from Neighborhoods
BP	GO:0010216	maintenance of DNA methylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0015453	oxidoreduction-driven active transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0016070	RNA metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0016722	oxidoreductase activity, acting on metal ions	IEP	Predict GO terms from Neighborhoods
MF	GO:0019104	DNA N-glycosylase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0019852	L-ascorbic acid metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0019904	protein domain specific binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0030599	pectinesterase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0030667	secretory granule membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031253	cell projection membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031526	brush border membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0032451	demethylase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0032774	RNA biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0032993	protein-DNA complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034728	nucleosome organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0035510	DNA dealkylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0035514	DNA demethylase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0042584	chromaffin granule membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0043076	megasporocyte nucleus	IEP	Predict GO terms from Neighborhoods
CC	GO:0043078	polar nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0044728	DNA methylation or demethylation	IEP	Predict GO terms from Neighborhoods
CC	GO:0044815	DNA packaging complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0045330	aspartyl esterase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0045490	pectin catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045637	regulation of myeloid cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045638	negative regulation of myeloid cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045652	regulation of megakaryocyte differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045653	negative regulation of megakaryocyte differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0046483	heterocycle metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0046982	protein heterodimerization activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0051747	cytosine C-5 DNA demethylase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0055072	iron ion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0065004	protein-DNA complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0070988	demethylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0080111	DNA demethylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0090304	nucleic acid metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0140571	transmembrane ascorbate ferrireductase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0140575	transmembrane monodehydroascorbate reductase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0140576	ascorbate homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:1901334	lactone metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903706	regulation of hemopoiesis	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR036390	WH_DNA-bd_sf	7	85
IPR005818	Histone_H1/H5_H15	11	72

External Links

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SOLTUB.AGRIA.G00000013394

Expression Profile

Co-expression Networks

Functional Annotation