SOLTUB.AGRIA.G00000013871

Description : Disease resistance protein (CC-NBS-LRR class) family

Gene families : OG_02_0000581 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000013871
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_28

Target	Alias	Description	ECC score	Gene Family Method
SOLTUB.AGRIA.G00000013148	No alias	Late blight resistance protein Rpi-amr3	0.04	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000013170	No alias	Late blight resistance protein Rpi-amr3	0.08	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000013148	No alias	Late blight resistance protein Rpi-amr3	0.04	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000013170	No alias	Late blight resistance protein Rpi-amr3	0.08	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000013148	No alias	Late blight resistance protein Rpi-amr3	0.04	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000013170	No alias	Late blight resistance protein Rpi-amr3	0.08	Orthogroups with 8 Potato genotypes

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
BP	GO:0002238	response to molecule of fungal origin	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005886	plasma membrane	IEA	AHRD
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	IEA	AHRD
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009620	response to fungus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
CC	GO:0016020	membrane	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0042221	response to chemical	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
MF	GO:0043531	ADP binding	IEA	AHRD
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0050832	defense response to fungus	IEA	AHRD
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051707	response to other organism	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000959	mitochondrial RNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0000963	mitochondrial RNA processing	IEP	Predict GO terms from Neighborhoods
CC	GO:0005759	mitochondrial matrix	IEP	Predict GO terms from Neighborhoods
BP	GO:0006399	tRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006400	tRNA modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0008033	tRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0009690	cytokinin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009691	cytokinin biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0009824	AMP dimethylallyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010467	gene expression	IEP	Predict GO terms from Neighborhoods
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	Predict GO terms from Neighborhoods
BP	GO:0034754	cellular hormone metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042446	hormone biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0052381	tRNA dimethylallyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0070525	tRNA threonylcarbamoyladenosine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0070900	mitochondrial tRNA modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0090646	mitochondrial tRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0140053	mitochondrial gene expression	IEP	Predict GO terms from Neighborhoods
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Predict GO terms from Neighborhoods
BP	GO:1900864	mitochondrial RNA modification	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR027417	P-loop_NTPase	287	396
IPR002182	NB-ARC	295	388

External Links

No external refs found!

SOLTUB.AGRIA.G00000013871

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation