SOLTUB.AGRIA.G00000013873

Description : Disease resistance protein (CC-NBS-LRR class) family

Gene families : OG_02_0000581 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000013873
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_28

Target	Alias	Description	ECC score	Gene Family Method
SOLTUB.AGRIA.G00000013148	No alias	Late blight resistance protein Rpi-amr3	0.03	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000013170	No alias	Late blight resistance protein Rpi-amr3	0.05	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000013148	No alias	Late blight resistance protein Rpi-amr3	0.03	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000013170	No alias	Late blight resistance protein Rpi-amr3	0.05	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000013148	No alias	Late blight resistance protein Rpi-amr3	0.03	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000013170	No alias	Late blight resistance protein Rpi-amr3	0.05	Orthogroups with 8 Potato genotypes

Type	GO Term	Name	Evidence	Source
BP	GO:0002238	response to molecule of fungal origin	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005886	plasma membrane	IEA	AHRD
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0008150	biological_process	None	Extended
CC	GO:0009506	plasmodesma	IEA	AHRD
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009620	response to fungus	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
CC	GO:0016020	membrane	None	Extended
CC	GO:0030054	cell junction	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0050832	defense response to fungus	IEA	AHRD
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051707	response to other organism	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0010588	cotyledon vascular tissue pattern formation	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002182	NB-ARC	12	143
IPR027417	P-loop_NTPase	5	140

External Links

No external refs found!