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  5. SOLTUB.AGRIA.G00000001452

SOLTUB.AGRIA.G00000001452


Description : Stu1, putative (DUF789)


Gene families : OG_02_0005306 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000001452
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_3


Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000419 RNA polymerase V complex IEP Predict GO terms from Neighborhoods
CC GO:0000428 DNA-directed RNA polymerase complex IEP Predict GO terms from Neighborhoods
BP GO:0000722 telomere maintenance via recombination IEP Predict GO terms from Neighborhoods
BP GO:0000731 DNA synthesis involved in DNA repair IEP Predict GO terms from Neighborhoods
CC GO:0000792 heterochromatin IEP Predict GO terms from Neighborhoods
CC GO:0005721 pericentric heterochromatin IEP Predict GO terms from Neighborhoods
BP GO:0006304 DNA modification IEP Predict GO terms from Neighborhoods
BP GO:0006305 DNA alkylation IEP Predict GO terms from Neighborhoods
BP GO:0006306 DNA methylation IEP Predict GO terms from Neighborhoods
BP GO:0006311 meiotic gene conversion IEP Predict GO terms from Neighborhoods
BP GO:0006312 mitotic recombination IEP Predict GO terms from Neighborhoods
BP GO:0006346 DNA methylation-dependent heterochromatin formation IEP Predict GO terms from Neighborhoods
BP GO:0007131 reciprocal meiotic recombination IEP Predict GO terms from Neighborhoods
BP GO:0007292 female gamete generation IEP Predict GO terms from Neighborhoods
BP GO:0010332 response to gamma radiation IEP Predict GO terms from Neighborhoods
MF GO:0015616 DNA translocase activity IEP Predict GO terms from Neighborhoods
BP GO:0030491 heteroduplex formation IEP Predict GO terms from Neighborhoods
CC GO:0030880 RNA polymerase complex IEP Predict GO terms from Neighborhoods
BP GO:0031048 small non-coding RNA-dependent heterochromatin formation IEP Predict GO terms from Neighborhoods
BP GO:0032069 regulation of nuclease activity IEP Predict GO terms from Neighborhoods
BP GO:0032070 regulation of deoxyribonuclease activity IEP Predict GO terms from Neighborhoods
BP GO:0032071 regulation of endodeoxyribonuclease activity IEP Predict GO terms from Neighborhoods
BP GO:0032075 positive regulation of nuclease activity IEP Predict GO terms from Neighborhoods
BP GO:0032077 positive regulation of deoxyribonuclease activity IEP Predict GO terms from Neighborhoods
BP GO:0032079 positive regulation of endodeoxyribonuclease activity IEP Predict GO terms from Neighborhoods
BP GO:0032392 DNA geometric change IEP Predict GO terms from Neighborhoods
BP GO:0032776 DNA methylation on cytosine IEP Predict GO terms from Neighborhoods
BP GO:0035561 regulation of chromatin binding IEP Predict GO terms from Neighborhoods
BP GO:0035563 positive regulation of chromatin binding IEP Predict GO terms from Neighborhoods
BP GO:0035822 gene conversion IEP Predict GO terms from Neighborhoods
BP GO:0035825 homologous recombination IEP Predict GO terms from Neighborhoods
CC GO:0035861 site of double-strand break IEP Predict GO terms from Neighborhoods
BP GO:0043150 DNA synthesis involved in double-strand break repair via homologous recombination IEP Predict GO terms from Neighborhoods
BP GO:0043330 response to exogenous dsRNA IEP Predict GO terms from Neighborhoods
BP GO:0043331 response to dsRNA IEP Predict GO terms from Neighborhoods
BP GO:0044728 DNA methylation or demethylation IEP Predict GO terms from Neighborhoods
BP GO:0045003 double-strand break repair via synthesis-dependent strand annealing IEP Predict GO terms from Neighborhoods
BP GO:0048477 oogenesis IEP Predict GO terms from Neighborhoods
BP GO:0051570 regulation of histone H3-K9 methylation IEP Predict GO terms from Neighborhoods
BP GO:0051574 positive regulation of histone H3-K9 methylation IEP Predict GO terms from Neighborhoods
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Predict GO terms from Neighborhoods
BP GO:0060147 regulation of post-transcriptional gene silencing IEP Predict GO terms from Neighborhoods
BP GO:0060148 positive regulation of post-transcriptional gene silencing IEP Predict GO terms from Neighborhoods
BP GO:0060964 regulation of miRNA-mediated gene silencing IEP Predict GO terms from Neighborhoods
BP GO:0060966 regulation of gene silencing by RNA IEP Predict GO terms from Neighborhoods
BP GO:0061982 meiosis I cell cycle process IEP Predict GO terms from Neighborhoods
BP GO:0070829 obsolete heterochromatin maintenance IEP Predict GO terms from Neighborhoods
BP GO:0071359 cellular response to dsRNA IEP Predict GO terms from Neighborhoods
BP GO:0071360 cellular response to exogenous dsRNA IEP Predict GO terms from Neighborhoods
BP GO:0071479 cellular response to ionizing radiation IEP Predict GO terms from Neighborhoods
BP GO:0071480 cellular response to gamma radiation IEP Predict GO terms from Neighborhoods
BP GO:0071897 DNA biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0080188 gene silencing by RNA-directed DNA methylation IEP Predict GO terms from Neighborhoods
CC GO:0090577 RNA polymerase IV transcription regulator complex IEP Predict GO terms from Neighborhoods
CC GO:0090734 site of DNA damage IEP Predict GO terms from Neighborhoods
BP GO:0140527 reciprocal homologous recombination IEP Predict GO terms from Neighborhoods
BP GO:0140718 facultative heterochromatin formation IEP Predict GO terms from Neighborhoods
BP GO:1900109 regulation of histone H3-K9 dimethylation IEP Predict GO terms from Neighborhoods
BP GO:1900111 positive regulation of histone H3-K9 dimethylation IEP Predict GO terms from Neighborhoods
BP GO:1900368 regulation of post-transcriptional gene silencing by RNA IEP Predict GO terms from Neighborhoods
BP GO:1900370 positive regulation of post-transcriptional gene silencing by RNA IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR008507 DUF789 13 88
No external refs found!