SOLTUB.AGRIA.G00000014976

Description : RNA polymerase, subunit H/Rpb5, conserved site-containing protein

Gene families : OG_02_0043466 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000014976
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_111

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004497	monooxygenase activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005506	iron ion binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005789	endoplasmic reticulum membrane	IEA	AHRD
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006720	isoprenoid metabolic process	None	Extended
BP	GO:0006721	terpenoid metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008299	isoprenoid biosynthetic process	None	Extended
BP	GO:0008610	lipid biosynthetic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009835	fruit ripening	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
CC	GO:0016020	membrane	None	Extended
CC	GO:0016021	integral component of membrane	IEA	AHRD
BP	GO:0016101	diterpenoid metabolic process	None	Extended
BP	GO:0016102	diterpenoid biosynthetic process	IEA	AHRD
BP	GO:0016114	terpenoid biosynthetic process	None	Extended
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	None	Extended
MF	GO:0016709	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	None	Extended
MF	GO:0016712	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen	IEA	AHRD
MF	GO:0020037	heme binding	IEA	AHRD
BP	GO:0021700	developmental maturation	None	Extended
BP	GO:0022414	reproductive process	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0042214	terpene metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
BP	GO:0046246	terpene biosynthetic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046906	tetrapyrrole binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0051761	sesquiterpene metabolic process	None	Extended
BP	GO:0051762	sesquiterpene biosynthetic process	IEA	AHRD
MF	GO:0052582	(+)-menthofuran synthase activity	IEA	AHRD
BP	GO:0071695	anatomical structure maturation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0102627	parthenolide 3beta-hydroxylase activity	IEA	AHRD
MF	GO:0102628	costunolide 3beta-hydroxylase activity	IEA	AHRD
MF	GO:0102876	psoralen synthase activity	IEA	AHRD
MF	GO:0102995	angelicin synthase activity	IEA	AHRD
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0120251	hydrocarbon biosynthetic process	None	Extended
BP	GO:0120252	hydrocarbon metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000109	nucleotide-excision repair complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0000287	magnesium ion binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0001824	blastocyst development	IEP	Predict GO terms from Neighborhoods
MF	GO:0003993	acid phosphatase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004427	inorganic diphosphate phosphatase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Predict GO terms from Neighborhoods
MF	GO:0004601	peroxidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004650	polygalacturonase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004723	calcium-dependent protein serine/threonine phosphatase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005509	calcium ion binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0005513	detection of calcium ion	IEP	Predict GO terms from Neighborhoods
CC	GO:0005955	calcineurin complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0005976	polysaccharide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006814	sodium ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006971	hypotonic response	IEP	Predict GO terms from Neighborhoods
CC	GO:0008540	proteasome regulatory particle, base subcomplex	IEP	Predict GO terms from Neighborhoods
BP	GO:0009229	thiamine diphosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0009678	pyrophosphate hydrolysis-driven proton transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009757	hexose mediated signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0010097	specification of stamen identity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010248	establishment or maintenance of transmembrane electrochemical gradient	IEP	Predict GO terms from Neighborhoods
BP	GO:0010255	glucose mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0010393	galacturonan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010446	response to alkaline pH	IEP	Predict GO terms from Neighborhoods
BP	GO:0010622	specification of ovule identity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016209	antioxidant activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016462	pyrophosphatase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	Predict GO terms from Neighborhoods
MF	GO:0016791	phosphatase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Predict GO terms from Neighborhoods
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Predict GO terms from Neighborhoods
MF	GO:0019863	IgE binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0019865	immunoglobulin binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0030955	potassium ion binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0031420	alkali metal ion binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0032578	aleurone grain membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0032780	negative regulation of ATP-dependent activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0033383	geranyl diphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0033838	flavonol-3-O-glucoside glucosyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0034768	(E)-beta-ocimene synthase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0035725	sodium ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0036402	proteasome-activating activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0042131	thiamine phosphate phosphatase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0042175	nuclear outer membrane-endoplasmic reticulum membrane network	IEP	Predict GO terms from Neighborhoods
BP	GO:0042357	thiamine diphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042539	hypotonic salinity response	IEP	Predict GO terms from Neighborhoods
BP	GO:0042723	thiamine-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042724	thiamine-containing compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042743	hydrogen peroxide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042744	hydrogen peroxide catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043248	proteasome assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0043667	pollen wall	IEP	Predict GO terms from Neighborhoods
BP	GO:0043921	modulation by host of viral transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0043922	negative regulation by host of viral transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0044788	modulation by host of viral process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044793	negative regulation by host of viral process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045229	external encapsulating structure organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0045488	pectin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045898	regulation of RNA polymerase II transcription preinitiation complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0045899	positive regulation of RNA polymerase II transcription preinitiation complex assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0047230	flavonol-3-O-glucoside L-rhamnosyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0047911	galacturan 1,4-alpha-galacturonidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0048229	gametophyte development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048281	inflorescence morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0048283	indeterminate inflorescence morphogenesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0050551	myrcene synthase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0051566	anthocyanidin-3-glucoside rhamnosyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051704	obsolete multi-organism process	IEP	Predict GO terms from Neighborhoods
MF	GO:0052731	phosphocholine phosphatase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0052732	phosphoethanolamine phosphatase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0060260	regulation of transcription initiation by RNA polymerase II	IEP	Predict GO terms from Neighborhoods
BP	GO:0060261	positive regulation of transcription initiation by RNA polymerase II	IEP	Predict GO terms from Neighborhoods
BP	GO:0070682	proteasome regulatory particle assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0071368	cellular response to cytokinin stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0071395	cellular response to jasmonic acid stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0071398	cellular response to fatty acid	IEP	Predict GO terms from Neighborhoods
BP	GO:0071555	cell wall organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0072593	reactive oxygen species metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901038	cyanidin 3-O-glucoside metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901428	regulation of syringal lignin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901430	positive regulation of syringal lignin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2000142	regulation of DNA-templated transcription initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:2000144	positive regulation of DNA-templated transcription initiation	IEP	Predict GO terms from Neighborhoods

No InterPro domains available for this sequence

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SOLTUB.AGRIA.G00000014976

Expression Profile

Co-expression Networks

Functional Annotation