SOLTUB.AGRIA.G00000015101

Description : Violaxanthin de-epoxidase

Gene families : OG_02_0001580 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000015101
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_177

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006631	fatty acid metabolic process	IEA	AHRD
BP	GO:0006720	isoprenoid metabolic process	None	Extended
BP	GO:0006721	terpenoid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006778	porphyrin-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009408	response to heat	IEA	AHRD
CC	GO:0009535	chloroplast thylakoid membrane	IEA	AHRD
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010028	xanthophyll cycle	IEA	AHRD
BP	GO:0015994	chlorophyll metabolic process	IEA	AHRD
CC	GO:0016020	membrane	None	Extended
BP	GO:0016108	tetraterpenoid metabolic process	None	Extended
BP	GO:0016116	carotenoid metabolic process	None	Extended
BP	GO:0016122	xanthophyll metabolic process	None	Extended
MF	GO:0016491	oxidoreductase activity	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0019904	protein domain specific binding	IEA	AHRD
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0031977	thylakoid lumen	IEA	AHRD
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
BP	GO:0033013	tetrapyrrole metabolic process	None	Extended
CC	GO:0034357	photosynthetic membrane	None	Extended
CC	GO:0042170	plastid membrane	None	Extended
CC	GO:0042651	thylakoid membrane	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
MF	GO:0046422	violaxanthin de-epoxidase activity	IEA	AHRD
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
CC	GO:0055035	plastid thylakoid membrane	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000372	Group I intron splicing	IEP	Predict GO terms from Neighborhoods
BP	GO:0000373	Group II intron splicing	IEP	Predict GO terms from Neighborhoods
BP	GO:0000376	RNA splicing, via transesterification reactions with guanosine as nucleophile	IEP	Predict GO terms from Neighborhoods
BP	GO:0000578	embryonic axis specification	IEP	Predict GO terms from Neighborhoods
MF	GO:0003729	mRNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0004103	choline kinase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005737	cytoplasm	IEP	Predict GO terms from Neighborhoods
CC	GO:0005880	nuclear microtubule	IEP	Predict GO terms from Neighborhoods
BP	GO:0006656	phosphatidylcholine biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0009921	auxin efflux carrier complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0009925	basal plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0009942	longitudinal axis specification	IEP	Predict GO terms from Neighborhoods
MF	GO:0010294	abscisic acid glucosyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010315	auxin export across the plasma membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0010329	auxin efflux transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010338	leaf formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010358	leaf shaping	IEP	Predict GO terms from Neighborhoods
BP	GO:0016137	glycoside metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0016328	lateral plasma membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0016757	glycosyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016758	hexosyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0031320	hexitol dehydrogenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0045177	apical part of cell	IEP	Predict GO terms from Neighborhoods
MF	GO:0045551	cinnamyl-alcohol dehydrogenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0046029	mannitol dehydrogenase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0046184	aldehyde biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046470	phosphatidylcholine metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0046527	glucosyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0048766	root hair initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0048826	cotyledon morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0048830	adventitious root development	IEP	Predict GO terms from Neighborhoods
MF	GO:0050502	cis-zeatin O-beta-D-glucosyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0052747	sinapyl alcohol dehydrogenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0080044	quercetin 7-O-glucosyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0080046	quercetin 4'-O-glucosyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0080161	auxin transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0080162	endoplasmic reticulum to cytosol auxin transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0102311	8-hydroxygeraniol dehydrogenase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1900992	(-)-secologanin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1900994	(-)-secologanin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901332	negative regulation of lateral root development	IEP	Predict GO terms from Neighborhoods
BP	GO:1901804	beta-glucoside metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901806	beta-glucoside biosynthetic process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR010788	VDE_dom	119	221
IPR010788	VDE_dom	226	263

External Links

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SOLTUB.AGRIA.G00000015101

Expression Profile

Co-expression Networks

Functional Annotation