SOLTUB.AGRIA.G00000015642

Description : Pentatricopeptide repeat-containing protein

Gene families : OG_02_0005946 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000015642
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_41

Type	GO Term	Name	Evidence	Source
BP	GO:0000959	mitochondrial RNA metabolic process	IEA	AHRD
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005773	vacuole	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
CC	GO:0009507	chloroplast	IEA	AHRD
CC	GO:0009536	plastid	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010214	seed coat development	IEA	AHRD
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0016556	mRNA modification	IEA	AHRD
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031425	chloroplast RNA processing	IEA	AHRD
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140547	acquisition of seed longevity	IEA	AHRD
BP	GO:1900865	chloroplast RNA modification	IEA	AHRD
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000212	meiotic spindle organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0001736	establishment of planar polarity	IEP	Predict GO terms from Neighborhoods
BP	GO:0001737	establishment of imaginal disc-derived wing hair orientation	IEP	Predict GO terms from Neighborhoods
CC	GO:0002178	palmitoyltransferase complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0004175	endopeptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004197	cysteine-type endopeptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004338	glucan exo-1,3-beta-glucosidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004565	beta-galactosidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004567	beta-mannosidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0005979	regulation of glycogen biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0005981	regulation of glycogen catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0007164	establishment of tissue polarity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008234	cysteine-type peptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0009055	electron transfer activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009608	response to symbiont	IEP	Predict GO terms from Neighborhoods
BP	GO:0009610	response to symbiotic fungus	IEP	Predict GO terms from Neighborhoods
BP	GO:0009734	auxin-activated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0009880	embryonic pattern specification	IEP	Predict GO terms from Neighborhoods
BP	GO:0010015	root morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010101	post-embryonic root morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010102	lateral root morphogenesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0015334	high-affinity oligopeptide transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015386	potassium:proton antiporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015923	mannosidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015925	galactosidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016409	palmitoyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016417	S-acyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0018198	peptidyl-cysteine modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0018230	peptidyl-L-cysteine S-palmitoylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0018231	peptidyl-S-diacylglycerol-L-cysteine biosynthetic process from peptidyl-cysteine	IEP	Predict GO terms from Neighborhoods
BP	GO:0018345	protein palmitoylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0019706	protein-cysteine S-palmitoyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0019707	protein-cysteine S-acyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0022821	solute:potassium antiporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0022900	electron transport chain	IEP	Predict GO terms from Neighborhoods
CC	GO:0030140	trans-Golgi network transport vesicle	IEP	Predict GO terms from Neighborhoods
CC	GO:0031225	anchored component of membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031226	intrinsic component of plasma membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0033907	beta-D-fucosidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0042138	meiotic DNA double-strand break formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0043201	response to leucine	IEP	Predict GO terms from Neighborhoods
MF	GO:0043394	proteoglycan binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0043470	regulation of carbohydrate catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043471	regulation of cellular carbohydrate catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0043849	Ras palmitoyltransferase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0045179	apical cortex	IEP	Predict GO terms from Neighborhoods
CC	GO:0046658	anchored component of plasma membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0047668	amygdalin beta-glucosidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0047701	beta-L-arabinosidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0048104	establishment of body hair or bristle planar orientation	IEP	Predict GO terms from Neighborhoods
BP	GO:0048527	lateral root development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048528	post-embryonic root development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048756	sieve cell differentiation	IEP	Predict GO terms from Neighborhoods
MF	GO:0050224	prunasin beta-glucosidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051026	chiasma assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0051139	metal cation:proton antiporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0061809	NAD+ nucleotidase, cyclic ADP-ribose generating	IEP	Predict GO terms from Neighborhoods
BP	GO:0070873	regulation of glycogen metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0071916	dipeptide transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0080052	response to histidine	IEP	Predict GO terms from Neighborhoods
BP	GO:0080053	response to phenylalanine	IEP	Predict GO terms from Neighborhoods
MF	GO:0080079	cellobiose glucosidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0080081	4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0080082	esculin beta-glucosidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0080083	beta-gentiobiose beta-glucosidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0090603	sieve element differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0090696	post-embryonic plant organ development	IEP	Predict GO terms from Neighborhoods
BP	GO:0090697	post-embryonic plant organ morphogenesis	IEP	Predict GO terms from Neighborhoods
CC	GO:0099738	cell cortex region	IEP	Predict GO terms from Neighborhoods
MF	GO:0102483	scopolin beta-glucosidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1901428	regulation of syringal lignin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901430	positive regulation of syringal lignin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2000280	regulation of root development	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	365	390
IPR002885	Pentatricopeptide_repeat	167	196
IPR002885	Pentatricopeptide_repeat	229	258
IPR002885	Pentatricopeptide_repeat	465	490
IPR002885	Pentatricopeptide_repeat	198	227
IPR002885	Pentatricopeptide_repeat	288	337
IPR002885	Pentatricopeptide_repeat	391	437
IPR002885	Pentatricopeptide_repeat	466	490
IPR002885	Pentatricopeptide_repeat	198	226
IPR002885	Pentatricopeptide_repeat	260	290
IPR002885	Pentatricopeptide_repeat	393	426
IPR002885	Pentatricopeptide_repeat	229	259
IPR002885	Pentatricopeptide_repeat	291	325
IPR002885	Pentatricopeptide_repeat	64	109
IPR004316	SWEET_sugar_transpr	801	864

External Links

No external refs found!

SOLTUB.AGRIA.G00000015642

Expression Profile

Co-expression Networks

Functional Annotation