SOLTUB.AGRIA.G00000000150

Description : Protein LOW PSII ACCUMULATION 1, chloroplastic

Gene families : OG_02_0011803 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000000150
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_152

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
CC	GO:0009521	photosystem	None	Extended
CC	GO:0009523	photosystem II	IEA	AHRD
CC	GO:0009532	plastid stroma	None	Extended
CC	GO:0009535	chloroplast thylakoid membrane	IEA	AHRD
CC	GO:0009570	chloroplast stroma	IEA	AHRD
CC	GO:0009575	chromoplast stroma	IEA	AHRD
BP	GO:0009611	response to wounding	IEA	AHRD
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009642	response to light intensity	None	Extended
BP	GO:0009644	response to high light intensity	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010206	photosystem II repair	IEA	AHRD
BP	GO:0010207	photosystem II assembly	IEA	AHRD
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0030091	protein repair	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0031969	chloroplast membrane	IEA	AHRD
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0034357	photosynthetic membrane	None	Extended
CC	GO:0042170	plastid membrane	None	Extended
CC	GO:0042651	thylakoid membrane	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
CC	GO:0055035	plastid thylakoid membrane	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000427	plastid-encoded plastid RNA polymerase complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0003824	catalytic activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004017	adenylate kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004127	cytidylate kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004311	farnesyltranstransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004337	geranyltranstransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004365	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004550	nucleoside diphosphate kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004618	phosphoglycerate kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004659	prenyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004791	thioredoxin-disulfide reductase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005622	intracellular anatomical structure	IEP	Predict GO terms from Neighborhoods
BP	GO:0005975	carbohydrate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0005977	glycogen metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0005978	glycogen biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0005982	starch metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0005984	disaccharide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0005985	sucrose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0005986	sucrose biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0005996	monosaccharide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006000	fructose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006002	fructose 6-phosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006006	glucose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006090	pyruvate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006091	generation of precursor metabolites and energy	IEP	Predict GO terms from Neighborhoods
BP	GO:0006094	gluconeogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0006096	glycolytic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006112	energy reserve metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006165	nucleoside diphosphate phosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006757	ATP generation from ADP	IEP	Predict GO terms from Neighborhoods
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006783	heme biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006793	phosphorus metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0008878	glucose-1-phosphate adenylyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008974	phosphoribulokinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009058	biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009132	nucleoside diphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009135	purine nucleoside diphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009179	purine ribonucleoside diphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009185	ribonucleoside diphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009250	glucan biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009311	oligosaccharide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009399	nitrogen fixation	IEP	Predict GO terms from Neighborhoods
BP	GO:0009409	response to cold	IEP	Predict GO terms from Neighborhoods
CC	GO:0009503	thylakoid light-harvesting complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0009517	PSII associated light-harvesting complex II	IEP	Predict GO terms from Neighborhoods
CC	GO:0009526	plastid envelope	IEP	Predict GO terms from Neighborhoods
CC	GO:0009579	thylakoid	IEP	Predict GO terms from Neighborhoods
BP	GO:0009773	photosynthetic electron transport in photosystem I	IEP	Predict GO terms from Neighborhoods
CC	GO:0009941	chloroplast envelope	IEP	Predict GO terms from Neighborhoods
CC	GO:0010170	glucose-1-phosphate adenylyltransferase complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0010176	homogentisate phytyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010189	vitamin E biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010196	nonphotochemical quenching	IEP	Predict GO terms from Neighborhoods
CC	GO:0010287	plastoglobule	IEP	Predict GO terms from Neighborhoods
MF	GO:0010297	heteropolysaccharide binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0010313	phytochrome binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0010319	stromule	IEP	Predict GO terms from Neighborhoods
MF	GO:0010354	homogentisate prenyltransferase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)	IEP	Predict GO terms from Neighborhoods
MF	GO:0015035	protein-disulfide reductase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015036	disulfide oxidoreductase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0015994	chlorophyll metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0015995	chlorophyll biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016051	carbohydrate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016052	carbohydrate catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016119	carotene metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016120	carotene biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016311	dephosphorylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0016491	oxidoreductase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016667	oxidoreductase activity, acting on a sulfur group of donors	IEP	Predict GO terms from Neighborhoods
MF	GO:0016668	oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	IEP	Predict GO terms from Neighborhoods
MF	GO:0016767	geranylgeranyl-diphosphate geranylgeranyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016774	phosphotransferase activity, carboxyl group as acceptor	IEP	Predict GO terms from Neighborhoods
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Predict GO terms from Neighborhoods
MF	GO:0016791	phosphatase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016824	hydrolase activity, acting on acid halide bonds	IEP	Predict GO terms from Neighborhoods
MF	GO:0016866	intramolecular transferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016868	intramolecular transferase activity, phosphotransferases	IEP	Predict GO terms from Neighborhoods
MF	GO:0018786	haloalkane dehalogenase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0019034	viral replication complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0019120	hydrolase activity, acting on acid halide bonds, in C-halide compounds	IEP	Predict GO terms from Neighborhoods
MF	GO:0019203	carbohydrate phosphatase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0019205	nucleobase-containing compound kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0019206	nucleoside kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0019252	starch biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019253	reductive pentose-phosphate cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0019318	hexose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019319	hexose biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019374	galactolipid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019375	galactolipid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019430	removal of superoxide radicals	IEP	Predict GO terms from Neighborhoods
BP	GO:0019637	organophosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019685	photosynthesis, dark reaction	IEP	Predict GO terms from Neighborhoods
MF	GO:0019840	isoprenoid binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0019904	protein domain specific binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0022900	electron transport chain	IEP	Predict GO terms from Neighborhoods
CC	GO:0030076	light-harvesting complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0030388	fructose 1,6-bisphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0031409	pigment binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0031676	plasma membrane-derived thylakoid membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031967	organelle envelope	IEP	Predict GO terms from Neighborhoods
CC	GO:0031975	envelope	IEP	Predict GO terms from Neighborhoods
BP	GO:0032366	intracellular sterol transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0032544	plastid translation	IEP	Predict GO terms from Neighborhoods
BP	GO:0033013	tetrapyrrole metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0033646	host intracellular part	IEP	Predict GO terms from Neighborhoods
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0042132	fructose 1,6-bisphosphate 1-phosphatase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0042168	heme metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042360	vitamin E metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042362	fat-soluble vitamin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042440	pigment metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0042597	periplasmic space	IEP	Predict GO terms from Neighborhoods
CC	GO:0042717	plasma membrane-derived chromatophore membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0043446	cellular alkane metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043448	alkane catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0043891	glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0044094	host cell nuclear part	IEP	Predict GO terms from Neighborhoods
BP	GO:0044237	cellular metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044249	cellular biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044281	small molecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044283	small molecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046031	ADP metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046034	ATP metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046148	pigment biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046351	disaccharide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046364	monosaccharide biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0046905	15-cis-phytoene synthase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0046939	nucleotide phosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0046940	nucleoside monophosphate phosphorylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0047100	glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0047134	protein-disulfide reductase (NAD(P)) activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0047538	2-carboxy-D-arabinitol-1-phosphatase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0048046	apoplast	IEP	Predict GO terms from Neighborhoods
BP	GO:0048564	photosystem I assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0050145	nucleoside monophosphate kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0050278	sedoheptulose-bisphosphatase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0050308	sugar-phosphatase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0051536	iron-sulfur cluster binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0051537	2 iron, 2 sulfur cluster binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0051540	metal cluster binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0051738	xanthophyll binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0061635	regulation of protein complex stability	IEP	Predict GO terms from Neighborhoods
BP	GO:0071369	cellular response to ethylene stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0080006	internode patterning	IEP	Predict GO terms from Neighborhoods
BP	GO:0090227	regulation of red or far-red light signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0090229	negative regulation of red or far-red light signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0097009	energy homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0097428	protein maturation by iron-sulfur cluster transfer	IEP	Predict GO terms from Neighborhoods
MF	GO:0097573	glutathione oxidoreductase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0097718	disordered domain specific binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0098807	chloroplast thylakoid membrane protein complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0102661	homogentisate solanyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0120253	hydrocarbon catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901576	organic substance biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:1902503	adenylyltransferase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1990066	energy quenching	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR036034	PDZ_sf	79	121
IPR011990	TPR-like_helical_dom_sf	207	270

External Links

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SOLTUB.AGRIA.G00000000150

Expression Profile

Co-expression Networks

Functional Annotation