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  5. SOLTUB.AGRIA.G00000016218

SOLTUB.AGRIA.G00000016218


Description : Protein VERNALIZATION INSENSITIVE 3


Gene families : OG_02_0014360 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000016218
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_100


Type GO Term Name Evidence Source
BP GO:0001666 response to hypoxia IEA AHRD
CC GO:0005677 chromatin silencing complex IEA AHRD
CC GO:0009506 plasmodesma IEA AHRD
BP GO:0010048 vernalization response IEA AHRD
CC GO:0016607 nuclear speck IEA AHRD
CC GO:0031519 PcG protein complex IEA AHRD
BP GO:0032922 circadian regulation of gene expression IEA AHRD
MF GO:0035064 methylated histone binding IEA AHRD
MF GO:0042802 identical protein binding IEA AHRD
BP GO:0045814 negative regulation of gene expression, epigenetic IEA AHRD
BP GO:0048587 regulation of short-day photoperiodism, flowering IEA AHRD
BP GO:0051571 positive regulation of histone H3-K4 methylation IEA AHRD
BP GO:0061087 positive regulation of histone H3-K27 methylation IEA AHRD
BP GO:0070417 cellular response to cold IEA AHRD
BP GO:1900111 positive regulation of histone H3-K9 dimethylation IEA AHRD
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predict GO terms from Neighborhoods
BP GO:0000226 microtubule cytoskeleton organization IEP Predict GO terms from Neighborhoods
BP GO:0000272 polysaccharide catabolic process IEP Predict GO terms from Neighborhoods
CC GO:0000786 nucleosome IEP Predict GO terms from Neighborhoods
CC GO:0000794 condensed nuclear chromosome IEP Predict GO terms from Neighborhoods
BP GO:0000910 cytokinesis IEP Predict GO terms from Neighborhoods
BP GO:0000911 cytokinesis by cell plate formation IEP Predict GO terms from Neighborhoods
CC GO:0000922 spindle pole IEP Predict GO terms from Neighborhoods
BP GO:0001539 cilium or flagellum-dependent cell motility IEP Predict GO terms from Neighborhoods
BP GO:0003002 regionalization IEP Predict GO terms from Neighborhoods
BP GO:0003006 developmental process involved in reproduction IEP Predict GO terms from Neighborhoods
BP GO:0003341 cilium movement IEP Predict GO terms from Neighborhoods
MF GO:0003777 microtubule motor activity IEP Predict GO terms from Neighborhoods
MF GO:0003838 sterol 24-C-methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0004672 protein kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0004674 protein serine/threonine kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0005102 signaling receptor binding IEP Predict GO terms from Neighborhoods
MF GO:0005524 ATP binding IEP Predict GO terms from Neighborhoods
MF GO:0005546 phosphatidylinositol-4,5-bisphosphate binding IEP Predict GO terms from Neighborhoods
MF GO:0005547 phosphatidylinositol-3,4,5-trisphosphate binding IEP Predict GO terms from Neighborhoods
CC GO:0005618 cell wall IEP Predict GO terms from Neighborhoods
CC GO:0005871 kinesin complex IEP Predict GO terms from Neighborhoods
CC GO:0005874 microtubule IEP Predict GO terms from Neighborhoods
CC GO:0005886 plasma membrane IEP Predict GO terms from Neighborhoods
BP GO:0006307 DNA dealkylation involved in DNA repair IEP Predict GO terms from Neighborhoods
BP GO:0006468 protein phosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0006696 ergosterol biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006793 phosphorus metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006796 phosphate-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006996 organelle organization IEP Predict GO terms from Neighborhoods
BP GO:0007010 cytoskeleton organization IEP Predict GO terms from Neighborhoods
BP GO:0007017 microtubule-based process IEP Predict GO terms from Neighborhoods
BP GO:0007018 microtubule-based movement IEP Predict GO terms from Neighborhoods
BP GO:0007049 cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0007231 osmosensory signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0007275 multicellular organism development IEP Predict GO terms from Neighborhoods
BP GO:0007389 pattern specification process IEP Predict GO terms from Neighborhoods
MF GO:0008017 microtubule binding IEP Predict GO terms from Neighborhoods
BP GO:0008156 negative regulation of DNA replication IEP Predict GO terms from Neighborhoods
MF GO:0008169 C-methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0008198 ferrous iron binding IEP Predict GO terms from Neighborhoods
BP GO:0008204 ergosterol metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0008574 plus-end-directed microtubule motor activity IEP Predict GO terms from Neighborhoods
CC GO:0009574 preprophase band IEP Predict GO terms from Neighborhoods
BP GO:0009605 response to external stimulus IEP Predict GO terms from Neighborhoods
BP GO:0009607 response to biotic stimulus IEP Predict GO terms from Neighborhoods
BP GO:0009608 response to symbiont IEP Predict GO terms from Neighborhoods
BP GO:0009610 response to symbiotic fungus IEP Predict GO terms from Neighborhoods
BP GO:0009624 response to nematode IEP Predict GO terms from Neighborhoods
BP GO:0009653 anatomical structure morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0009658 chloroplast organization IEP Predict GO terms from Neighborhoods
BP GO:0009664 plant-type cell wall organization IEP Predict GO terms from Neighborhoods
BP GO:0009785 blue light signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0009832 plant-type cell wall biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0009834 plant-type secondary cell wall biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0009856 pollination IEP Predict GO terms from Neighborhoods
MF GO:0009881 photoreceptor activity IEP Predict GO terms from Neighborhoods
MF GO:0009882 blue light photoreceptor activity IEP Predict GO terms from Neighborhoods
BP GO:0009888 tissue development IEP Predict GO terms from Neighborhoods
BP GO:0009902 chloroplast relocation IEP Predict GO terms from Neighborhoods
BP GO:0009903 chloroplast avoidance movement IEP Predict GO terms from Neighborhoods
BP GO:0009904 chloroplast accumulation movement IEP Predict GO terms from Neighborhoods
BP GO:0009908 flower development IEP Predict GO terms from Neighborhoods
CC GO:0009925 basal plasma membrane IEP Predict GO terms from Neighborhoods
BP GO:0010015 root morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0010016 shoot system morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0010075 regulation of meristem growth IEP Predict GO terms from Neighborhoods
MF GO:0010314 phosphatidylinositol-5-phosphate binding IEP Predict GO terms from Neighborhoods
BP GO:0010360 negative regulation of anion channel activity IEP Predict GO terms from Neighborhoods
BP GO:0010361 regulation of anion channel activity by blue light IEP Predict GO terms from Neighborhoods
BP GO:0010362 negative regulation of anion channel activity by blue light IEP Predict GO terms from Neighborhoods
BP GO:0010375 stomatal complex patterning IEP Predict GO terms from Neighborhoods
BP GO:0010393 galacturonan metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010440 stomatal lineage progression IEP Predict GO terms from Neighborhoods
BP GO:0010555 response to mannitol IEP Predict GO terms from Neighborhoods
MF GO:0015631 tubulin binding IEP Predict GO terms from Neighborhoods
CC GO:0016020 membrane IEP Predict GO terms from Neighborhoods
BP GO:0016052 carbohydrate catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016129 phytosteroid biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0016301 kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0016310 phosphorylation IEP Predict GO terms from Neighborhoods
MF GO:0016740 transferase activity IEP Predict GO terms from Neighborhoods
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predict GO terms from Neighborhoods
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predict GO terms from Neighborhoods
MF GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides IEP Predict GO terms from Neighborhoods
MF GO:0017046 peptide hormone binding IEP Predict GO terms from Neighborhoods
CC GO:0017053 transcription repressor complex IEP Predict GO terms from Neighborhoods
BP GO:0019750 chloroplast localization IEP Predict GO terms from Neighborhoods
BP GO:0022414 reproductive process IEP Predict GO terms from Neighborhoods
BP GO:0022607 cellular component assembly IEP Predict GO terms from Neighborhoods
CC GO:0030312 external encapsulating structure IEP Predict GO terms from Neighborhoods
BP GO:0030317 flagellated sperm motility IEP Predict GO terms from Neighborhoods
MF GO:0030570 pectate lyase activity IEP Predict GO terms from Neighborhoods
CC GO:0030849 autosome IEP Predict GO terms from Neighborhoods
BP GO:0030865 cortical cytoskeleton organization IEP Predict GO terms from Neighborhoods
BP GO:0031109 microtubule polymerization or depolymerization IEP Predict GO terms from Neighborhoods
BP GO:0031122 cytoplasmic microtubule organization IEP Predict GO terms from Neighborhoods
BP GO:0031341 regulation of cell killing IEP Predict GO terms from Neighborhoods
CC GO:0031523 Myb complex IEP Predict GO terms from Neighborhoods
MF GO:0032266 phosphatidylinositol-3-phosphate binding IEP Predict GO terms from Neighborhoods
MF GO:0032451 demethylase activity IEP Predict GO terms from Neighborhoods
BP GO:0032502 developmental process IEP Predict GO terms from Neighborhoods
BP GO:0032875 regulation of DNA endoreduplication IEP Predict GO terms from Neighborhoods
BP GO:0032876 negative regulation of DNA endoreduplication IEP Predict GO terms from Neighborhoods
MF GO:0033218 amide binding IEP Predict GO terms from Neighborhoods
BP GO:0035510 DNA dealkylation IEP Predict GO terms from Neighborhoods
BP GO:0035511 oxidative DNA demethylation IEP Predict GO terms from Neighborhoods
MF GO:0035514 DNA demethylase activity IEP Predict GO terms from Neighborhoods
MF GO:0038023 signaling receptor activity IEP Predict GO terms from Neighborhoods
BP GO:0040008 regulation of growth IEP Predict GO terms from Neighborhoods
MF GO:0042277 peptide binding IEP Predict GO terms from Neighborhoods
BP GO:0042546 cell wall biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0042996 regulation of Golgi to plasma membrane protein transport IEP Predict GO terms from Neighborhoods
BP GO:0042998 positive regulation of Golgi to plasma membrane protein transport IEP Predict GO terms from Neighborhoods
BP GO:0043207 response to external biotic stimulus IEP Predict GO terms from Neighborhoods
CC GO:0043226 organelle IEP Predict GO terms from Neighborhoods
CC GO:0043227 membrane-bounded organelle IEP Predict GO terms from Neighborhoods
CC GO:0043229 intracellular organelle IEP Predict GO terms from Neighborhoods
CC GO:0043231 intracellular membrane-bounded organelle IEP Predict GO terms from Neighborhoods
BP GO:0043622 cortical microtubule organization IEP Predict GO terms from Neighborhoods
MF GO:0043734 DNA-N1-methyladenine dioxygenase activity IEP Predict GO terms from Neighborhoods
BP GO:0044107 cellular alcohol metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0044108 cellular alcohol biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0044111 formation of structure involved in a symbiotic process IEP Predict GO terms from Neighborhoods
BP GO:0044419 biological process involved in interspecies interaction between organisms IEP Predict GO terms from Neighborhoods
CC GO:0045169 fusome IEP Predict GO terms from Neighborhoods
CC GO:0045177 apical part of cell IEP Predict GO terms from Neighborhoods
BP GO:0045478 fusome organization IEP Predict GO terms from Neighborhoods
BP GO:0045488 pectin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0045490 pectin catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0045927 positive regulation of growth IEP Predict GO terms from Neighborhoods
BP GO:0046602 regulation of mitotic centrosome separation IEP Predict GO terms from Neighborhoods
BP GO:0046777 protein autophosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0046785 microtubule polymerization IEP Predict GO terms from Neighborhoods
BP GO:0048229 gametophyte development IEP Predict GO terms from Neighborhoods
BP GO:0048364 root development IEP Predict GO terms from Neighborhoods
BP GO:0048367 shoot system development IEP Predict GO terms from Neighborhoods
BP GO:0048437 floral organ development IEP Predict GO terms from Neighborhoods
BP GO:0048528 post-embryonic root development IEP Predict GO terms from Neighborhoods
BP GO:0048638 regulation of developmental growth IEP Predict GO terms from Neighborhoods
BP GO:0048731 system development IEP Predict GO terms from Neighborhoods
BP GO:0048827 phyllome development IEP Predict GO terms from Neighborhoods
BP GO:0048856 anatomical structure development IEP Predict GO terms from Neighborhoods
BP GO:0051179 localization IEP Predict GO terms from Neighborhoods
CC GO:0051233 spindle midzone IEP Predict GO terms from Neighborhoods
BP GO:0051234 establishment of localization IEP Predict GO terms from Neighborhoods
BP GO:0051255 spindle midzone assembly IEP Predict GO terms from Neighborhoods
BP GO:0051256 mitotic spindle midzone assembly IEP Predict GO terms from Neighborhoods
BP GO:0051321 meiotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0051644 plastid localization IEP Predict GO terms from Neighborhoods
BP GO:0051656 establishment of organelle localization IEP Predict GO terms from Neighborhoods
BP GO:0051667 establishment of plastid localization IEP Predict GO terms from Neighborhoods
BP GO:0051704 obsolete multi-organism process IEP Predict GO terms from Neighborhoods
BP GO:0051707 response to other organism IEP Predict GO terms from Neighborhoods
BP GO:0051709 regulation of killing of cells of another organism IEP Predict GO terms from Neighborhoods
MF GO:0051747 cytosine C-5 DNA demethylase activity IEP Predict GO terms from Neighborhoods
BP GO:0051839 regulation by host of cytolysis of symbiont cells IEP Predict GO terms from Neighborhoods
BP GO:0051841 positive regulation by host of cytolysis of symbiont cells IEP Predict GO terms from Neighborhoods
BP GO:0052093 formation of specialized structure for nutrient acquisition IEP Predict GO terms from Neighborhoods
BP GO:0052096 formation of syncytium involving giant cell for nutrient acquisition IEP Predict GO terms from Neighborhoods
BP GO:0055073 cadmium ion homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0055078 sodium ion homeostasis IEP Predict GO terms from Neighborhoods
MF GO:0060089 molecular transducer activity IEP Predict GO terms from Neighborhoods
BP GO:0060285 cilium-dependent cell motility IEP Predict GO terms from Neighborhoods
BP GO:0060294 cilium movement involved in cell motility IEP Predict GO terms from Neighborhoods
BP GO:0060866 leaf abscission IEP Predict GO terms from Neighborhoods
BP GO:0061687 detoxification of inorganic compound IEP Predict GO terms from Neighborhoods
BP GO:0062075 pollen aperture formation IEP Predict GO terms from Neighborhoods
CC GO:0070176 DRM complex IEP Predict GO terms from Neighborhoods
MF GO:0070273 phosphatidylinositol-4-phosphate binding IEP Predict GO terms from Neighborhoods
MF GO:0070300 phosphatidic acid binding IEP Predict GO terms from Neighborhoods
BP GO:0070989 oxidative demethylation IEP Predict GO terms from Neighborhoods
BP GO:0071214 cellular response to abiotic stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071260 cellular response to mechanical stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071478 cellular response to radiation IEP Predict GO terms from Neighborhoods
BP GO:0071482 cellular response to light stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071484 cellular response to light intensity IEP Predict GO terms from Neighborhoods
BP GO:0071485 cellular response to absence of light IEP Predict GO terms from Neighborhoods
BP GO:0071554 cell wall organization or biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0071585 detoxification of cadmium ion IEP Predict GO terms from Neighborhoods
BP GO:0071588 hydrogen peroxide mediated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0071669 plant-type cell wall organization or biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0071840 cellular component organization or biogenesis IEP Predict GO terms from Neighborhoods
MF GO:0080025 phosphatidylinositol-3,5-bisphosphate binding IEP Predict GO terms from Neighborhoods
BP GO:0080111 DNA demethylation IEP Predict GO terms from Neighborhoods
CC GO:0090406 pollen tube IEP Predict GO terms from Neighborhoods
BP GO:0090548 response to nitrate starvation IEP Predict GO terms from Neighborhoods
CC GO:0090571 RNA polymerase II transcription repressor complex IEP Predict GO terms from Neighborhoods
CC GO:0090619 meiotic spindle pole IEP Predict GO terms from Neighborhoods
BP GO:0090696 post-embryonic plant organ development IEP Predict GO terms from Neighborhoods
BP GO:0090698 post-embryonic plant morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0097384 cellular lipid biosynthetic process IEP Predict GO terms from Neighborhoods
CC GO:0097431 mitotic spindle pole IEP Predict GO terms from Neighborhoods
BP GO:0097435 supramolecular fiber organization IEP Predict GO terms from Neighborhoods
BP GO:0097722 sperm motility IEP Predict GO terms from Neighborhoods
CC GO:0099080 supramolecular complex IEP Predict GO terms from Neighborhoods
CC GO:0099081 supramolecular polymer IEP Predict GO terms from Neighborhoods
BP GO:0099402 plant organ development IEP Predict GO terms from Neighborhoods
CC GO:0099512 supramolecular fiber IEP Predict GO terms from Neighborhoods
CC GO:0099513 polymeric cytoskeletal fiber IEP Predict GO terms from Neighborhoods
BP GO:0104004 cellular response to environmental stimulus IEP Predict GO terms from Neighborhoods
MF GO:0106310 protein serine kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0140096 catalytic activity, acting on a protein IEP Predict GO terms from Neighborhoods
MF GO:1901265 nucleoside phosphate binding IEP Predict GO terms from Neighborhoods
BP GO:1901528 hydrogen peroxide mediated signaling pathway involved in stomatal movement IEP Predict GO terms from Neighborhoods
BP GO:1902653 secondary alcohol biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1903078 positive regulation of protein localization to plasma membrane IEP Predict GO terms from Neighborhoods
BP GO:1903792 negative regulation of anion transport IEP Predict GO terms from Neighborhoods
BP GO:1903960 negative regulation of anion transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:1904377 positive regulation of protein localization to cell periphery IEP Predict GO terms from Neighborhoods
BP GO:1904550 response to arachidonic acid IEP Predict GO terms from Neighborhoods
BP GO:1905392 plant organ morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:1905477 positive regulation of protein localization to membrane IEP Predict GO terms from Neighborhoods
CC GO:1990023 mitotic spindle midzone IEP Predict GO terms from Neighborhoods
BP GO:2000023 regulation of lateral root development IEP Predict GO terms from Neighborhoods
BP GO:2000069 regulation of post-embryonic root development IEP Predict GO terms from Neighborhoods
BP GO:2000104 negative regulation of DNA-templated DNA replication IEP Predict GO terms from Neighborhoods
BP GO:2000114 regulation of establishment of cell polarity IEP Predict GO terms from Neighborhoods
BP GO:2000280 regulation of root development IEP Predict GO terms from Neighborhoods
BP GO:2000603 regulation of secondary growth IEP Predict GO terms from Neighborhoods
BP GO:2000605 positive regulation of secondary growth IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR032881 Oberon_PHD 123 242
No external refs found!