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  5. SOLTUB.AGRIA.G00000001647

SOLTUB.AGRIA.G00000001647


Description : Replication protein A 70 kDa DNA-binding subunit B


Gene families : OG_02_0000001 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000001647
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_59

Target Alias Description ECC score Gene Family Method Actions
SOLTUB.AGRIA.G00000001793 No alias Replication protein A 70 kDa DNA-binding subunit B 0.02 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000007607 No alias Replication protein A 70 kDa DNA-binding subunit B 0.06 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000010685 No alias Replication protein A 70 kDa DNA-binding subunit B 0.05 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000016802 No alias Replication protein A 70 kDa DNA-binding subunit 0.03 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000018543 No alias Unknown protein 0.06 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000033439 No alias Replication protein A 70 kDa DNA-binding subunit B 0.06 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000041520 No alias Replication protein A 70 kDa DNA-binding subunit B 0.05 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000001793 No alias Replication protein A 70 kDa DNA-binding subunit B 0.02 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000007607 No alias Replication protein A 70 kDa DNA-binding subunit B 0.06 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000010685 No alias Replication protein A 70 kDa DNA-binding subunit B 0.05 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000016802 No alias Replication protein A 70 kDa DNA-binding subunit 0.03 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000018543 No alias Unknown protein 0.06 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000033439 No alias Replication protein A 70 kDa DNA-binding subunit B 0.06 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000041520 No alias Replication protein A 70 kDa DNA-binding subunit B 0.05 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000001793 No alias Replication protein A 70 kDa DNA-binding subunit B 0.02 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000007607 No alias Replication protein A 70 kDa DNA-binding subunit B 0.06 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000010685 No alias Replication protein A 70 kDa DNA-binding subunit B 0.05 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000016802 No alias Replication protein A 70 kDa DNA-binding subunit 0.03 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000018543 No alias Unknown protein 0.06 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000033439 No alias Replication protein A 70 kDa DNA-binding subunit B 0.06 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000041520 No alias Replication protein A 70 kDa DNA-binding subunit B 0.05 Orthogroups with 8 Potato genotypes

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0005983 starch catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006012 galactose metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0008333 endosome to lysosome transport IEP Predict GO terms from Neighborhoods
CC GO:0009501 amyloplast IEP Predict GO terms from Neighborhoods
CC GO:0009569 chloroplast starch grain IEP Predict GO terms from Neighborhoods
BP GO:0009660 amyloplast organization IEP Predict GO terms from Neighborhoods
MF GO:0009702 L-arabinokinase activity IEP Predict GO terms from Neighborhoods
BP GO:0010021 amylopectin biosynthetic process IEP Predict GO terms from Neighborhoods
CC GO:0010368 chloroplast isoamylase complex IEP Predict GO terms from Neighborhoods
MF GO:0019156 isoamylase activity IEP Predict GO terms from Neighborhoods
MF GO:0019200 carbohydrate kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0019321 pentose metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019566 arabinose metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0030119 AP-type membrane coat adaptor complex IEP Predict GO terms from Neighborhoods
CC GO:0030123 AP-3 adaptor complex IEP Predict GO terms from Neighborhoods
CC GO:0030897 HOPS complex IEP Predict GO terms from Neighborhoods
CC GO:0032541 cortical endoplasmic reticulum IEP Predict GO terms from Neighborhoods
BP GO:0034058 endosomal vesicle fusion IEP Predict GO terms from Neighborhoods
CC GO:0043033 isoamylase complex IEP Predict GO terms from Neighborhoods
CC GO:0043036 starch grain IEP Predict GO terms from Neighborhoods
BP GO:0046835 carbohydrate phosphorylation IEP Predict GO terms from Neighborhoods
CC GO:1990578 perinuclear endoplasmic reticulum membrane IEP Predict GO terms from Neighborhoods
BP GO:2000896 amylopectin metabolic process IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR012340 NA-bd_OB-fold 181 289
IPR013955 Rep_factor-A_C 195 310
No external refs found!