SOLTUB.AGRIA.G00000016247

Description : Rhamnogalacturonate lyase family protein

Gene families : OG_02_0001839 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000016247
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_253

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	IEA	AHRD
BP	GO:0005975	carbohydrate metabolic process	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0016829	lyase activity	IEA	AHRD
MF	GO:0016835	carbon-oxygen lyase activity	None	Extended
MF	GO:0016837	carbon-oxygen lyase activity, acting on polysaccharides	None	Extended
MF	GO:0030246	carbohydrate binding	IEA	AHRD
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0102210	rhamnogalacturonan endolyase activity	IEA	AHRD
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR029411	RG-lyase_III	477	665
IPR029413	RG-lyase_II	391	463
IPR011013	Gal_mutarotase_sf_dom	54	328
IPR008979	Galactose-bd-like_sf	474	666
IPR010325	Rhamnogal_lyase	42	237
IPR013784	Carb-bd-like_fold	365	467

External Links

No external refs found!