SOLTUB.AGRIA.G00000016417

Description : MADS-box transcription factor family protein

Gene families : OG_02_0014418 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000016417
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_21

Type	GO Term	Name	Evidence	Source
MF	GO:0000976	transcription cis-regulatory region binding	None	Extended
MF	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding	None	Extended
MF	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	IEA	AHRD
MF	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	IEA	AHRD
MF	GO:0000987	cis-regulatory region sequence-specific DNA binding	None	Extended
MF	GO:0001067	transcription regulatory region nucleic acid binding	None	Extended
BP	GO:0001558	regulation of cell growth	None	Extended
BP	GO:0003002	regionalization	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEA	AHRD
BP	GO:0007389	pattern specification process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010022	meristem determinacy	None	Extended
BP	GO:0010093	specification of floral organ identity	None	Extended
BP	GO:0010097	specification of stamen identity	IEA	AHRD
BP	GO:0010152	pollen maturation	IEA	AHRD
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010582	floral meristem determinacy	IEA	AHRD
BP	GO:0010769	regulation of cell morphogenesis involved in differentiation	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0021700	developmental maturation	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0022603	regulation of anatomical structure morphogenesis	None	Extended
BP	GO:0022604	regulation of cell morphogenesis	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0040008	regulation of growth	None	Extended
MF	GO:0043565	sequence-specific DNA binding	None	Extended
BP	GO:0048316	seed development	IEA	AHRD
BP	GO:0048481	plant ovule development	IEA	AHRD
BP	GO:0048608	reproductive structure development	None	Extended
BP	GO:0048638	regulation of developmental growth	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051510	regulation of unidimensional cell growth	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0080092	regulation of pollen tube growth	IEA	AHRD
BP	GO:0090701	specification of plant organ identity	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0099402	plant organ development	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
MF	GO:1990837	sequence-specific double-stranded DNA binding	None	Extended
BP	GO:2000241	regulation of reproductive process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000104	succinate dehydrogenase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0000272	polysaccharide catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0003950	NAD+ ADP-ribosyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003987	acetate-CoA ligase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004392	heme oxygenase (decyclizing) activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Predict GO terms from Neighborhoods
MF	GO:0004602	glutathione peroxidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004623	phospholipase A2 activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004650	polygalacturonase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005504	fatty acid binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0005576	extracellular region	IEP	Predict GO terms from Neighborhoods
CC	GO:0005749	mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	IEP	Predict GO terms from Neighborhoods
BP	GO:0005976	polysaccharide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006083	acetate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006105	succinate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006121	mitochondrial electron transport, succinate to ubiquinone	IEP	Predict GO terms from Neighborhoods
BP	GO:0006471	protein ADP-ribosylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006569	tryptophan catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006629	lipid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006631	fatty acid metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0008177	succinate dehydrogenase (ubiquinone) activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008379	thioredoxin peroxidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009269	response to desiccation	IEP	Predict GO terms from Neighborhoods
BP	GO:0009403	toxin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009404	toxin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009664	plant-type cell wall organization	IEP	Predict GO terms from Neighborhoods
MF	GO:0009674	potassium:sodium symporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009827	plant-type cell wall modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0009830	cell wall modification involved in abscission	IEP	Predict GO terms from Neighborhoods
BP	GO:0009835	fruit ripening	IEP	Predict GO terms from Neighborhoods
BP	GO:0009838	abscission	IEP	Predict GO terms from Neighborhoods
BP	GO:0009900	dehiscence	IEP	Predict GO terms from Neighborhoods
BP	GO:0009901	anther dehiscence	IEP	Predict GO terms from Neighborhoods
BP	GO:0010047	fruit dehiscence	IEP	Predict GO terms from Neighborhoods
BP	GO:0010226	response to lithium ion	IEP	Predict GO terms from Neighborhoods
BP	GO:0010227	floral organ abscission	IEP	Predict GO terms from Neighborhoods
BP	GO:0010259	multicellular organism aging	IEP	Predict GO terms from Neighborhoods
BP	GO:0010393	galacturonan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010412	mannan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010888	negative regulation of lipid storage	IEP	Predict GO terms from Neighborhoods
CC	GO:0012511	monolayer-surrounded lipid storage body	IEP	Predict GO terms from Neighborhoods
MF	GO:0015370	solute:sodium symporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0016052	carbohydrate catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016138	glycoside biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016144	S-glycoside biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0016207	4-coumarate-CoA ligase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016635	oxidoreductase activity, acting on the CH-CH group of donors, quinone or related compound as acceptor	IEP	Predict GO terms from Neighborhoods
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	Predict GO terms from Neighborhoods
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Predict GO terms from Neighborhoods
MF	GO:0016872	intramolecular lyase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0018858	benzoate-CoA ligase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0019187	beta-1,4-mannosyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0019605	butyrate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019756	cyanogenic glycoside biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019758	glycosinolate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019761	glucosinolate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0022411	cellular component disassembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0030312	external encapsulating structure	IEP	Predict GO terms from Neighborhoods
MF	GO:0031956	medium-chain fatty acid-CoA ligase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0032060	bleb assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0042341	cyanogenic glycoside metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042545	cell wall modification	IEP	Predict GO terms from Neighborhoods
CC	GO:0043667	pollen wall	IEP	Predict GO terms from Neighborhoods
MF	GO:0043759	methylbutanoate-CoA ligase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0044255	cellular lipid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044277	cell wall disassembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0045229	external encapsulating structure organization	IEP	Predict GO terms from Neighborhoods
CC	GO:0045257	succinate dehydrogenase complex (ubiquinone)	IEP	Predict GO terms from Neighborhoods
CC	GO:0045281	succinate dehydrogenase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0045283	fumarate reductase complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0045430	chalcone isomerase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0045488	pectin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045490	pectin catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046459	short-chain fatty acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046475	glycerophospholipid catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0047184	1-acylglycerophosphocholine O-acyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0047499	calcium-independent phospholipase A2 activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0047760	butyrate-CoA ligase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0047911	galacturan 1,4-alpha-galacturonidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0048039	ubiquinone binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0048235	pollen sperm cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0048609	multicellular organismal reproductive process	IEP	Predict GO terms from Neighborhoods
MF	GO:0050218	propionate-CoA ligase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0050898	nitrile metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0051536	iron-sulfur cluster binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0051537	2 iron, 2 sulfur cluster binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0051538	3 iron, 4 sulfur cluster binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0051540	metal cluster binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0051753	mannan synthase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051791	medium-chain fatty acid metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0051920	peroxiredoxin activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0052314	phytoalexin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0052315	phytoalexin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0070212	protein poly-ADP-ribosylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0071554	cell wall organization or biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0071555	cell wall organization	IEP	Predict GO terms from Neighborhoods
MF	GO:0071614	linoleic acid epoxygenase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0071695	anatomical structure maturation	IEP	Predict GO terms from Neighborhoods
BP	GO:0080028	nitrile biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0090447	glycerol-3-phosphate 2-O-acyltransferase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0097038	perinuclear endoplasmic reticulum	IEP	Predict GO terms from Neighborhoods
BP	GO:0097502	mannosylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0106286	(E)-caffeate-CoA ligase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0106290	trans-cinnamate-CoA ligase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0140824	thioredoxin-dependent peroxiredoxin activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1901659	glycosyl compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902609	(R)-2-hydroxy-alpha-linolenic acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1905953	negative regulation of lipid localization	IEP	Predict GO terms from Neighborhoods
MF	GO:1990137	plant seed peroxidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:1990404	NAD+-protein ADP-ribosyltransferase activity	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	10	53
IPR036879	TF_MADSbox_sf	1	63

External Links

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SOLTUB.AGRIA.G00000016417

Expression Profile

Co-expression Networks

Functional Annotation