Description : evolutionarily conserved C-terminal region 2
Gene families : OG_02_0003695 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000001695 | |
| Cluster | HCCA Clusters (HRR 50 & PCC 0.5): Cluster_10 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003729 | mRNA binding | IEA | AHRD |
| MF | GO:0005515 | protein binding | IEA | AHRD |
| CC | GO:0005634 | nucleus | IEA | AHRD |
| CC | GO:0005829 | cytosol | IEA | AHRD |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000154 | rRNA modification | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0000243 | commitment complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000245 | spliceosomal complex assembly | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000381 | regulation of alternative mRNA splicing, via spliceosome | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000451 | rRNA 2'-O-methylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000494 | box C/D RNA 3'-end processing | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0001056 | RNA polymerase III activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0001091 | RNA polymerase II general transcription initiation factor binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0001094 | TFIID-class transcription factor complex binding | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0001651 | dense fibrillar component | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0001652 | granular component | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0001732 | formation of cytoplasmic translation initiation complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0001835 | blastocyst hatching | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0001882 | nucleoside binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0002240 | response to molecule of oomycetes origin | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0003360 | brainstem development | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0004869 | cysteine-type endopeptidase inhibitor activity | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005666 | RNA polymerase III complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005681 | spliceosomal complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005684 | U2-type spliceosomal complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005732 | sno(s)RNA-containing ribonucleoprotein complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005736 | RNA polymerase I complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005791 | rough endoplasmic reticulum | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006213 | pyrimidine nucleoside metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006353 | DNA-templated transcription termination | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006356 | regulation of transcription by RNA polymerase I | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006360 | transcription by RNA polymerase I | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006383 | transcription by RNA polymerase III | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006386 | termination of RNA polymerase III transcription | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006403 | RNA localization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0007000 | nucleolus organization | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0008097 | 5S rRNA binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0008143 | poly(A) binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0008380 | RNA splicing | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0008649 | rRNA methyltransferase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009120 | deoxyribonucleoside metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009304 | tRNA transcription | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009561 | megagametogenesis | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0010329 | auxin efflux transmembrane transporter activity | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0015030 | Cajal body | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0015086 | cadmium ion transmembrane transporter activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0015691 | cadmium ion transport | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0015692 | lead ion transport | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016074 | sno(s)RNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016145 | S-glycoside catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0017126 | nucleologenesis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0018364 | peptidyl-glutamine methylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0019759 | glycosinolate catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0019762 | glucosinolate catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0021987 | cerebral cortex development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0022618 | ribonucleoprotein complex assembly | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0030515 | snoRNA binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0030628 | pre-mRNA 3'-splice site binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031126 | sno(s)RNA 3'-end processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031167 | rRNA methylation | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0031428 | box C/D RNP complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0031672 | A band | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0032040 | small-subunit processome | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032479 | regulation of type I interferon production | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032481 | positive regulation of type I interferon production | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0032549 | ribonucleoside binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032648 | regulation of interferon-beta production | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032728 | positive regulation of interferon-beta production | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0033290 | eukaryotic 48S preinitiation complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0033967 | box C/D RNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0034963 | box C/D RNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0035188 | hatching | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0036009 | protein-glutamine N-methyltransferase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0042256 | mature ribosome assembly | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0042344 | indole glucosinolate catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0042436 | indole-containing compound catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0042797 | tRNA transcription by RNA polymerase III | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043144 | sno(s)RNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043484 | regulation of RNA splicing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043628 | small regulatory ncRNA 3'-end processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0044273 | sulfur compound catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0045292 | mRNA cis splicing, via spliceosome | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0045773 | positive regulation of axon extension | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0046104 | thymidine metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0046125 | pyrimidine deoxyribonucleoside metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048024 | regulation of mRNA splicing, via spliceosome | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048254 | snoRNA localization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0050684 | regulation of mRNA processing | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0050733 | RS domain binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0050772 | positive regulation of axonogenesis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0055078 | sodium ion homeostasis | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0070300 | phosphatidic acid binding | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0070993 | translation preinitiation complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0071004 | U2-type prespliceosome | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0071010 | prespliceosome | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0071013 | catalytic step 2 spliceosome | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0071014 | post-mRNA release spliceosomal complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0071366 | cellular response to indolebutyric acid stimulus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0071417 | cellular response to organonitrogen compound | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0071495 | cellular response to endogenous stimulus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0071684 | organism emergence from protective structure | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0071826 | ribonucleoprotein complex subunit organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0080026 | response to indolebutyric acid | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0080161 | auxin transmembrane transporter activity | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0089701 | U2AF complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0098781 | ncRNA transcription | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0140102 | catalytic activity, acting on a rRNA | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0140426 | PAMP-triggered immunity signalling pathway | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1901140 | p-coumaryl alcohol transport | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1903311 | regulation of mRNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1990258 | histone glutamine methylation | IEP | Predict GO terms from Neighborhoods |
| MF | GO:1990259 | histone-glutamine methyltransferase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1990416 | cellular response to brain-derived neurotrophic factor stimulus | IEP | Predict GO terms from Neighborhoods |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:2000071 | regulation of defense response by callose deposition | IEP | Predict GO terms from Neighborhoods |
No InterPro domains available for this sequence
| No external refs found! |