SOLTUB.AGRIA.G00000016976

Description : Pentatricopeptide repeat-containing protein

Gene families : OG_02_0009080 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000016976
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_36

Type	GO Term	Name	Evidence	Source
BP	GO:0000959	mitochondrial RNA metabolic process	IEA	AHRD
BP	GO:0003006	developmental process involved in reproduction	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009793	embryo development ending in seed dormancy	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	IEA	AHRD
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	IEA	AHRD
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	608	636
IPR002885	Pentatricopeptide_repeat	192	219
IPR002885	Pentatricopeptide_repeat	161	186
IPR002885	Pentatricopeptide_repeat	506	533
IPR002885	Pentatricopeptide_repeat	539	567
IPR002885	Pentatricopeptide_repeat	639	687
IPR002885	Pentatricopeptide_repeat	230	271
IPR002885	Pentatricopeptide_repeat	294	341
IPR002885	Pentatricopeptide_repeat	725	772
IPR002885	Pentatricopeptide_repeat	433	481
IPR002885	Pentatricopeptide_repeat	394	427
IPR002885	Pentatricopeptide_repeat	296	330
IPR002885	Pentatricopeptide_repeat	226	260
IPR002885	Pentatricopeptide_repeat	642	676
IPR002885	Pentatricopeptide_repeat	471	504
IPR002885	Pentatricopeptide_repeat	727	761
IPR002885	Pentatricopeptide_repeat	331	365
IPR002885	Pentatricopeptide_repeat	437	470
IPR002885	Pentatricopeptide_repeat	401	435
IPR002885	Pentatricopeptide_repeat	762	796

External Links

No external refs found!

SOLTUB.AGRIA.G00000016976

Expression Profile

Co-expression Networks

Functional Annotation