SOLTUB.AGRIA.G00000017196

Description : Zinc finger family protein

Gene families : OG_02_0000733 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000017196
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_253

Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0000904	cell morphogenesis involved in differentiation	None	Extended
MF	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	IEA	AHRD
BP	GO:0001709	cell fate determination	IEA	AHRD
BP	GO:0003002	regionalization	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	AHRD
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEA	AHRD
BP	GO:0006928	obsolete movement of cell or subcellular component	IEA	AHRD
BP	GO:0006950	response to stress	None	Extended
BP	GO:0007389	pattern specification process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009628	response to abiotic stimulus	IEA	AHRD
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0009812	flavonoid metabolic process	None	Extended
BP	GO:0009813	flavonoid biosynthetic process	IEA	AHRD
BP	GO:0009826	unidimensional cell growth	None	Extended
BP	GO:0009860	pollen tube growth	IEA	AHRD
BP	GO:0009888	tissue development	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009932	cell tip growth	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010051	xylem and phloem pattern formation	None	Extended
BP	GO:0010087	phloem or xylem histogenesis	IEA	AHRD
BP	GO:0010305	leaf vascular tissue pattern formation	IEA	AHRD
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010500	transmitting tissue development	IEA	AHRD
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010588	cotyledon vascular tissue pattern formation	IEA	AHRD
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016049	cell growth	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0021536	diencephalon development	IEA	AHRD
BP	GO:0021537	telencephalon development	IEA	AHRD
BP	GO:0021761	limbic system development	IEA	AHRD
BP	GO:0021953	central nervous system neuron differentiation	IEA	AHRD
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0030030	cell projection organization	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
BP	GO:0030182	neuron differentiation	None	Extended
BP	GO:0031175	neuron projection development	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033554	cellular response to stress	IEA	AHRD
BP	GO:0040007	growth	None	Extended
BP	GO:0040011	locomotion	IEA	AHRD
BP	GO:0042221	response to chemical	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	AHRD
BP	GO:0045595	regulation of cell differentiation	IEA	AHRD
BP	GO:0045893	positive regulation of DNA-templated transcription	IEA	AHRD
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
MF	GO:0046872	metal ion binding	IEA	AHRD
BP	GO:0048364	root development	None	Extended
BP	GO:0048438	floral whorl development	None	Extended
BP	GO:0048467	gynoecium development	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048523	negative regulation of cellular process	IEA	AHRD
BP	GO:0048583	regulation of response to stimulus	IEA	AHRD
BP	GO:0048588	developmental cell growth	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0048731	system development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
BP	GO:0061564	axon development	IEA	AHRD
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070887	cellular response to chemical stimulus	IEA	AHRD
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080022	primary root development	IEA	AHRD
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0099402	plant organ development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0120036	plasma membrane bounded cell projection organization	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1990058	fruit replum development	IEA	AHRD
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004497	monooxygenase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0006722	triterpenoid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009314	response to radiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0009416	response to light stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0009640	photomorphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0009742	brassinosteroid mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0009808	lignin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009809	lignin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009821	alkaloid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010015	root morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010086	embryonic root morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010224	response to UV-B	IEP	Predict GO terms from Neighborhoods
BP	GO:0016134	saponin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016135	saponin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016137	glycoside metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016138	glycoside biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0016491	oxidoreductase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Predict GO terms from Neighborhoods
MF	GO:0016712	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen	IEP	Predict GO terms from Neighborhoods
BP	GO:0019742	pentacyclic triterpenoid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0030900	forebrain development	IEP	Predict GO terms from Neighborhoods
BP	GO:0035834	indole alkaloid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0035835	indole alkaloid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0040034	regulation of development, heterochronic	IEP	Predict GO terms from Neighborhoods
BP	GO:0043401	steroid hormone mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0048506	regulation of timing of meristematic phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:0048509	regulation of meristem development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048510	regulation of timing of transition from vegetative to reproductive phase	IEP	Predict GO terms from Neighborhoods
BP	GO:0048598	embryonic morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0048666	neuron development	IEP	Predict GO terms from Neighborhoods
BP	GO:0080113	regulation of seed growth	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR036236	Znf_C2H2_sf	115	139
IPR036236	Znf_C2H2_sf	184	223

External Links

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SOLTUB.AGRIA.G00000017196

Expression Profile

Co-expression Networks

Functional Annotation