SOLTUB.AGRIA.G00000017345

Description : RING/U-box superfamily protein

Gene families : OG_02_0014727 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000017345
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_39

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010228	vegetative to reproductive phase transition of meristem	IEA	AHRD
BP	GO:0010498	proteasomal protein catabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0030163	protein catabolic process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	IEA	AHRD
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
MF	GO:0046872	metal ion binding	IEA	AHRD
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
MF	GO:0061630	ubiquitin protein ligase activity	IEA	AHRD
MF	GO:0061659	ubiquitin-like protein ligase activity	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0002215	defense response to nematode	IEP	Predict GO terms from Neighborhoods
BP	GO:0006074	(1->3)-beta-D-glucan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006076	(1->3)-beta-D-glucan catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006082	organic acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0008153	para-aminobenzoic acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0008300	isoprenoid catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0008422	beta-glucosidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008483	transaminase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009073	aromatic amino acid family biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009251	glucan catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009685	gibberellin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009686	gibberellin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010496	intercellular transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0010497	plasmodesmata-mediated intercellular transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0015926	glucosidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0016053	organic acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016103	diterpenoid catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016115	terpenoid catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	Predict GO terms from Neighborhoods
MF	GO:0031320	hexitol dehydrogenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0042973	glucan endo-1,3-beta-D-glucosidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0044000	movement in host	IEP	Predict GO terms from Neighborhoods
BP	GO:0044001	migration in host	IEP	Predict GO terms from Neighborhoods
BP	GO:0044247	cellular polysaccharide catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044275	cellular carbohydrate catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045487	gibberellin catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0045543	gibberellin 2-beta-dioxygenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0045551	cinnamyl-alcohol dehydrogenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0046029	mannitol dehydrogenase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0046482	para-aminobenzoic acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046739	transport of virus in multicellular host	IEP	Predict GO terms from Neighborhoods
BP	GO:0046794	transport of virus	IEP	Predict GO terms from Neighborhoods
MF	GO:0047924	geraniol dehydrogenase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051273	beta-glucan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051275	beta-glucan catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051701	biological process involved in interaction with host	IEP	Predict GO terms from Neighborhoods
MF	GO:0052634	C-19 gibberellin 2-beta-dioxygenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0102311	8-hydroxygeraniol dehydrogenase activity	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR001841	Znf_RING	147	188

External Links

No external refs found!

SOLTUB.AGRIA.G00000017345

Expression Profile

Co-expression Networks

Functional Annotation