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  5. SOLTUB.AGRIA.G00000001868

SOLTUB.AGRIA.G00000001868


Description : Regulator of chromosome condensation (RCC1) family protein


Gene families : OG_02_0011987 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000001868
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_211


Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA AHRD
BP GO:0006807 nitrogen compound metabolic process IEA AHRD
BP GO:0009411 response to UV IEA AHRD
CC GO:0012505 endomembrane system IEA AHRD
BP GO:0031324 negative regulation of cellular metabolic process IEA AHRD
CC GO:0031410 cytoplasmic vesicle IEA AHRD
BP GO:0032501 multicellular organismal process IEA AHRD
BP GO:0032502 developmental process IEA AHRD
MF GO:0042802 identical protein binding IEA AHRD
CC GO:0043232 intracellular non-membrane-bounded organelle IEA AHRD
BP GO:0044238 primary metabolic process IEA AHRD
BP GO:0044260 cellular macromolecule metabolic process IEA AHRD
BP GO:0048583 regulation of response to stimulus IEA AHRD
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Type GO Term Name Evidence Source
BP GO:0000083 regulation of transcription involved in G1/S transition of mitotic cell cycle IEP Predict GO terms from Neighborhoods
MF GO:0000285 1-phosphatidylinositol-3-phosphate 5-kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0000414 regulation of histone H3-K36 methylation IEP Predict GO terms from Neighborhoods
BP GO:0000416 positive regulation of histone H3-K36 methylation IEP Predict GO terms from Neighborhoods
CC GO:0000794 condensed nuclear chromosome IEP Predict GO terms from Neighborhoods
CC GO:0000812 Swr1 complex IEP Predict GO terms from Neighborhoods
MF GO:0000993 RNA polymerase II complex binding IEP Predict GO terms from Neighborhoods
MF GO:0001046 core promoter sequence-specific DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0001091 RNA polymerase II general transcription initiation factor binding IEP Predict GO terms from Neighborhoods
MF GO:0001094 TFIID-class transcription factor complex binding IEP Predict GO terms from Neighborhoods
MF GO:0001098 basal transcription machinery binding IEP Predict GO terms from Neighborhoods
MF GO:0001099 basal RNA polymerase II transcription machinery binding IEP Predict GO terms from Neighborhoods
BP GO:0001833 inner cell mass cell proliferation IEP Predict GO terms from Neighborhoods
BP GO:0001843 neural tube closure IEP Predict GO terms from Neighborhoods
MF GO:0002039 p53 binding IEP Predict GO terms from Neighborhoods
BP GO:0002376 immune system process IEP Predict GO terms from Neighborhoods
BP GO:0002474 antigen processing and presentation of peptide antigen via MHC class I IEP Predict GO terms from Neighborhoods
BP GO:0002478 antigen processing and presentation of exogenous peptide antigen IEP Predict GO terms from Neighborhoods
BP GO:0002495 antigen processing and presentation of peptide antigen via MHC class II IEP Predict GO terms from Neighborhoods
BP GO:0002504 antigen processing and presentation of peptide or polysaccharide antigen via MHC class II IEP Predict GO terms from Neighborhoods
BP GO:0002574 thrombocyte differentiation IEP Predict GO terms from Neighborhoods
MF GO:0003825 alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity IEP Predict GO terms from Neighborhoods
MF GO:0004373 glycogen (starch) synthase activity IEP Predict GO terms from Neighborhoods
MF GO:0004525 ribonuclease III activity IEP Predict GO terms from Neighborhoods
MF GO:0004617 phosphoglycerate dehydrogenase activity IEP Predict GO terms from Neighborhoods
MF GO:0004672 protein kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0004674 protein serine/threonine kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0004707 MAP kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0004805 trehalose-phosphatase activity IEP Predict GO terms from Neighborhoods
MF GO:0005049 nuclear export signal receptor activity IEP Predict GO terms from Neighborhoods
CC GO:0005643 nuclear pore IEP Predict GO terms from Neighborhoods
CC GO:0005946 alpha,alpha-trehalose-phosphate synthase complex (UDP-forming) IEP Predict GO terms from Neighborhoods
BP GO:0005984 disaccharide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0005986 sucrose biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0005991 trehalose metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0005992 trehalose biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006468 protein phosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0006611 protein export from nucleus IEP Predict GO terms from Neighborhoods
BP GO:0006661 phosphatidylinositol biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006935 chemotaxis IEP Predict GO terms from Neighborhoods
BP GO:0006971 hypotonic response IEP Predict GO terms from Neighborhoods
BP GO:0007112 male meiosis cytokinesis IEP Predict GO terms from Neighborhoods
CC GO:0008023 transcription elongation factor complex IEP Predict GO terms from Neighborhoods
CC GO:0008024 cyclin/CDK positive transcription elongation factor complex IEP Predict GO terms from Neighborhoods
MF GO:0008134 transcription factor binding IEP Predict GO terms from Neighborhoods
MF GO:0008194 UDP-glycosyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0008333 endosome to lysosome transport IEP Predict GO terms from Neighborhoods
MF GO:0008353 RNA polymerase II CTD heptapeptide repeat kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0009011 starch synthase activity IEP Predict GO terms from Neighborhoods
BP GO:0009301 snRNA transcription IEP Predict GO terms from Neighborhoods
BP GO:0009311 oligosaccharide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009312 oligosaccharide biosynthetic process IEP Predict GO terms from Neighborhoods
CC GO:0009501 amyloplast IEP Predict GO terms from Neighborhoods
BP GO:0009555 pollen development IEP Predict GO terms from Neighborhoods
BP GO:0009616 RNAi-mediated antiviral immune response IEP Predict GO terms from Neighborhoods
BP GO:0009700 indole phytoalexin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009868 jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0009875 pollen-pistil interaction IEP Predict GO terms from Neighborhoods
BP GO:0010021 amylopectin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010118 stomatal movement IEP Predict GO terms from Neighborhoods
BP GO:0010120 camalexin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010216 maintenance of DNA methylation IEP Predict GO terms from Neighborhoods
BP GO:0010256 endomembrane system organization IEP Predict GO terms from Neighborhoods
BP GO:0010267 ta-siRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0010483 pollen tube reception IEP Predict GO terms from Neighborhoods
BP GO:0010500 transmitting tissue development IEP Predict GO terms from Neighborhoods
BP GO:0010927 cellular component assembly involved in morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0010971 positive regulation of G2/M transition of mitotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0016051 carbohydrate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0016073 snRNA metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0016157 sucrose synthase activity IEP Predict GO terms from Neighborhoods
MF GO:0016301 kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0016308 1-phosphatidylinositol-4-phosphate 5-kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0016310 phosphorylation IEP Predict GO terms from Neighborhoods
MF GO:0016740 transferase activity IEP Predict GO terms from Neighborhoods
MF GO:0016757 glycosyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0016758 hexosyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predict GO terms from Neighborhoods
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predict GO terms from Neighborhoods
MF GO:0016791 phosphatase activity IEP Predict GO terms from Neighborhoods
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Predict GO terms from Neighborhoods
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Predict GO terms from Neighborhoods
BP GO:0019065 receptor-mediated endocytosis of virus by host cell IEP Predict GO terms from Neighborhoods
MF GO:0019203 carbohydrate phosphatase activity IEP Predict GO terms from Neighborhoods
BP GO:0019252 starch biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0019882 antigen processing and presentation IEP Predict GO terms from Neighborhoods
BP GO:0019884 antigen processing and presentation of exogenous antigen IEP Predict GO terms from Neighborhoods
BP GO:0019886 antigen processing and presentation of exogenous peptide antigen via MHC class II IEP Predict GO terms from Neighborhoods
CC GO:0019908 nuclear cyclin-dependent protein kinase holoenzyme complex IEP Predict GO terms from Neighborhoods
BP GO:0022402 cell cycle process IEP Predict GO terms from Neighborhoods
BP GO:0022413 reproductive process in single-celled organism IEP Predict GO terms from Neighborhoods
BP GO:0030154 cell differentiation IEP Predict GO terms from Neighborhoods
MF GO:0030247 polysaccharide binding IEP Predict GO terms from Neighborhoods
BP GO:0030422 siRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0030437 ascospore formation IEP Predict GO terms from Neighborhoods
BP GO:0030447 filamentous growth IEP Predict GO terms from Neighborhoods
BP GO:0030593 neutrophil chemotaxis IEP Predict GO terms from Neighborhoods
BP GO:0030595 leukocyte chemotaxis IEP Predict GO terms from Neighborhoods
BP GO:0030641 regulation of cellular pH IEP Predict GO terms from Neighborhoods
CC GO:0030670 phagocytic vesicle membrane IEP Predict GO terms from Neighborhoods
MF GO:0030957 Tat protein binding IEP Predict GO terms from Neighborhoods
BP GO:0031445 regulation of heterochromatin formation IEP Predict GO terms from Neighborhoods
BP GO:0031452 negative regulation of heterochromatin formation IEP Predict GO terms from Neighborhoods
CC GO:0031901 early endosome membrane IEP Predict GO terms from Neighborhoods
CC GO:0031902 late endosome membrane IEP Predict GO terms from Neighborhoods
BP GO:0031938 obsolete regulation of chromatin silencing at telomere IEP Predict GO terms from Neighborhoods
BP GO:0032288 myelin assembly IEP Predict GO terms from Neighborhoods
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predict GO terms from Neighborhoods
BP GO:0032438 melanosome organization IEP Predict GO terms from Neighborhoods
BP GO:0032786 positive regulation of DNA-templated transcription, elongation IEP Predict GO terms from Neighborhoods
CC GO:0032806 carboxy-terminal domain protein kinase complex IEP Predict GO terms from Neighborhoods
BP GO:0032968 positive regulation of transcription elongation by RNA polymerase II IEP Predict GO terms from Neighborhoods
MF GO:0033201 alpha-1,4-glucan synthase activity IEP Predict GO terms from Neighborhoods
BP GO:0033206 meiotic cytokinesis IEP Predict GO terms from Neighborhoods
MF GO:0034211 GTP-dependent protein kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0034243 regulation of transcription elongation by RNA polymerase II IEP Predict GO terms from Neighborhoods
MF GO:0034593 phosphatidylinositol bisphosphate phosphatase activity IEP Predict GO terms from Neighborhoods
MF GO:0034595 phosphatidylinositol phosphate 5-phosphatase activity IEP Predict GO terms from Neighborhoods
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0035148 tube formation IEP Predict GO terms from Neighborhoods
BP GO:0035196 miRNA processing IEP Predict GO terms from Neighborhoods
MF GO:0035251 UDP-glucosyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0036168 filamentous growth of a population of unicellular organisms in response to heat IEP Predict GO terms from Neighborhoods
BP GO:0036180 filamentous growth of a population of unicellular organisms in response to biotic stimulus IEP Predict GO terms from Neighborhoods
BP GO:0036289 peptidyl-serine autophosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0040011 locomotion IEP Predict GO terms from Neighborhoods
BP GO:0042330 taxis IEP Predict GO terms from Neighborhoods
BP GO:0042539 hypotonic salinity response IEP Predict GO terms from Neighborhoods
BP GO:0042542 response to hydrogen peroxide IEP Predict GO terms from Neighborhoods
MF GO:0042578 phosphoric ester hydrolase activity IEP Predict GO terms from Neighborhoods
BP GO:0042590 antigen processing and presentation of exogenous peptide antigen via MHC class I IEP Predict GO terms from Neighborhoods
BP GO:0043122 regulation of I-kappaB kinase/NF-kappaB signaling IEP Predict GO terms from Neighborhoods
BP GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling IEP Predict GO terms from Neighborhoods
MF GO:0043175 RNA polymerase core enzyme binding IEP Predict GO terms from Neighborhoods
BP GO:0043388 positive regulation of DNA binding IEP Predict GO terms from Neighborhoods
CC GO:0043680 filiform apparatus IEP Predict GO terms from Neighborhoods
MF GO:0043813 phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity IEP Predict GO terms from Neighborhoods
BP GO:0043922 negative regulation by host of viral transcription IEP Predict GO terms from Neighborhoods
BP GO:0043935 sexual sporulation resulting in formation of a cellular spore IEP Predict GO terms from Neighborhoods
BP GO:0043966 histone H3 acetylation IEP Predict GO terms from Neighborhoods
BP GO:0043983 histone H4-K12 acetylation IEP Predict GO terms from Neighborhoods
BP GO:0044088 regulation of vacuole organization IEP Predict GO terms from Neighborhoods
BP GO:0044154 histone H3-K14 acetylation IEP Predict GO terms from Neighborhoods
BP GO:0044182 filamentous growth of a population of unicellular organisms IEP Predict GO terms from Neighborhoods
BP GO:0044262 cellular carbohydrate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046217 indole phytoalexin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046351 disaccharide biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0046524 sucrose-phosphate synthase activity IEP Predict GO terms from Neighborhoods
MF GO:0046527 glucosyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0046777 protein autophosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0046794 transport of virus IEP Predict GO terms from Neighborhoods
BP GO:0046854 phosphatidylinositol phosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0048002 antigen processing and presentation of peptide antigen IEP Predict GO terms from Neighborhoods
BP GO:0048145 regulation of fibroblast proliferation IEP Predict GO terms from Neighborhoods
BP GO:0048147 negative regulation of fibroblast proliferation IEP Predict GO terms from Neighborhoods
BP GO:0048229 gametophyte development IEP Predict GO terms from Neighborhoods
BP GO:0048449 floral organ formation IEP Predict GO terms from Neighborhoods
BP GO:0048462 carpel formation IEP Predict GO terms from Neighborhoods
BP GO:0048646 anatomical structure formation involved in morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0048753 pigment granule organization IEP Predict GO terms from Neighborhoods
BP GO:0048766 root hair initiation IEP Predict GO terms from Neighborhoods
BP GO:0050727 regulation of inflammatory response IEP Predict GO terms from Neighborhoods
BP GO:0050900 leukocyte migration IEP Predict GO terms from Neighborhoods
BP GO:0051214 RNAi-mediated antiviral immunity against RNA virus IEP Predict GO terms from Neighborhoods
BP GO:0051452 intracellular pH reduction IEP Predict GO terms from Neighborhoods
BP GO:0051453 regulation of intracellular pH IEP Predict GO terms from Neighborhoods
BP GO:0051704 obsolete multi-organism process IEP Predict GO terms from Neighborhoods
BP GO:0051851 modulation by host of symbiont process IEP Predict GO terms from Neighborhoods
BP GO:0052317 camalexin metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0052742 phosphatidylinositol kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0052810 1-phosphatidylinositol-5-kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0052866 phosphatidylinositol phosphate phosphatase activity IEP Predict GO terms from Neighborhoods
BP GO:0060326 cell chemotaxis IEP Predict GO terms from Neighborhoods
BP GO:0060606 tube closure IEP Predict GO terms from Neighborhoods
MF GO:0070063 RNA polymerase binding IEP Predict GO terms from Neighborhoods
BP GO:0070413 trehalose metabolism in response to stress IEP Predict GO terms from Neighborhoods
MF GO:0070577 lysine-acetylated histone binding IEP Predict GO terms from Neighborhoods
BP GO:0071621 granulocyte chemotaxis IEP Predict GO terms from Neighborhoods
BP GO:0071836 nectar secretion IEP Predict GO terms from Neighborhoods
BP GO:0075509 endocytosis involved in viral entry into host cell IEP Predict GO terms from Neighborhoods
BP GO:0080136 priming of cellular response to stress IEP Predict GO terms from Neighborhoods
BP GO:0090054 regulation of silent mating-type cassette heterochromatin formation IEP Predict GO terms from Neighborhoods
BP GO:0090332 stomatal closure IEP Predict GO terms from Neighborhoods
BP GO:0090383 phagosome acidification IEP Predict GO terms from Neighborhoods
BP GO:0090385 phagosome-lysosome fusion IEP Predict GO terms from Neighborhoods
CC GO:0097346 INO80-type complex IEP Predict GO terms from Neighborhoods
BP GO:0097352 autophagosome maturation IEP Predict GO terms from Neighborhoods
BP GO:0097529 myeloid leukocyte migration IEP Predict GO terms from Neighborhoods
BP GO:0097530 granulocyte migration IEP Predict GO terms from Neighborhoods
BP GO:0098781 ncRNA transcription IEP Predict GO terms from Neighborhoods
MF GO:0099122 RNA polymerase II C-terminal domain binding IEP Predict GO terms from Neighborhoods
BP GO:0099504 synaptic vesicle cycle IEP Predict GO terms from Neighborhoods
MF GO:0102986 trehalose synthase activity IEP Predict GO terms from Neighborhoods
MF GO:0106018 phosphatidylinositol-3,5-bisphosphate phosphatase activity IEP Predict GO terms from Neighborhoods
MF GO:0106140 P-TEFb complex binding IEP Predict GO terms from Neighborhoods
BP GO:0120261 regulation of heterochromatin organization IEP Predict GO terms from Neighborhoods
BP GO:0120262 negative regulation of heterochromatin organization IEP Predict GO terms from Neighborhoods
MF GO:0140033 acetylation-dependent protein binding IEP Predict GO terms from Neighborhoods
MF GO:0140104 molecular carrier activity IEP Predict GO terms from Neighborhoods
MF GO:0140142 nucleocytoplasmic carrier activity IEP Predict GO terms from Neighborhoods
MF GO:0140296 general transcription initiation factor binding IEP Predict GO terms from Neighborhoods
BP GO:1900049 regulation of histone exchange IEP Predict GO terms from Neighborhoods
BP GO:1900051 positive regulation of histone exchange IEP Predict GO terms from Neighborhoods
BP GO:1900424 regulation of defense response to bacterium IEP Predict GO terms from Neighborhoods
BP GO:1900426 positive regulation of defense response to bacterium IEP Predict GO terms from Neighborhoods
BP GO:1901407 regulation of phosphorylation of RNA polymerase II C-terminal domain IEP Predict GO terms from Neighborhoods
BP GO:1901976 regulation of cell cycle checkpoint IEP Predict GO terms from Neighborhoods
BP GO:1901977 negative regulation of cell cycle checkpoint IEP Predict GO terms from Neighborhoods
BP GO:1902065 response to L-glutamate IEP Predict GO terms from Neighborhoods
BP GO:1902751 positive regulation of cell cycle G2/M phase transition IEP Predict GO terms from Neighborhoods
BP GO:1903046 meiotic cell cycle process IEP Predict GO terms from Neighborhoods
BP GO:1903100 1-phosphatidyl-1D-myo-inositol 3,5-bisphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903426 regulation of reactive oxygen species biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1904562 phosphatidylinositol 5-phosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1905161 protein localization to phagocytic vesicle IEP Predict GO terms from Neighborhoods
BP GO:1905268 negative regulation of chromatin organization IEP Predict GO terms from Neighborhoods
BP GO:1905269 positive regulation of chromatin organization IEP Predict GO terms from Neighborhoods
BP GO:1905393 plant organ formation IEP Predict GO terms from Neighborhoods
BP GO:1990266 neutrophil migration IEP Predict GO terms from Neighborhoods
BP GO:2000001 regulation of DNA damage checkpoint IEP Predict GO terms from Neighborhoods
BP GO:2000002 negative regulation of DNA damage checkpoint IEP Predict GO terms from Neighborhoods
BP GO:2000785 regulation of autophagosome assembly IEP Predict GO terms from Neighborhoods
BP GO:2000896 amylopectin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:2001021 negative regulation of response to DNA damage stimulus IEP Predict GO terms from Neighborhoods
MF GO:2001070 starch binding IEP Predict GO terms from Neighborhoods
BP GO:2001253 regulation of histone H3-K36 trimethylation IEP Predict GO terms from Neighborhoods
BP GO:2001255 positive regulation of histone H3-K36 trimethylation IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR000408 Reg_chr_condens 262 309
IPR000408 Reg_chr_condens 313 363
IPR000408 Reg_chr_condens 152 199
IPR000408 Reg_chr_condens 203 257
IPR036770 Ankyrin_rpt-contain_sf 6 134
IPR009091 RCC1/BLIP-II 406 506
IPR009091 RCC1/BLIP-II 150 428
IPR020683 DUF3447 45 125
No external refs found!