SOLTUB.AGRIA.G00000018094


Description : Retrovirus-related Pol polyprotein from transposon RE1


Gene families : OG_02_0000238 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000018094
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_103


Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
CC GO:0000502 proteasome complex IEP Predict GO terms from Neighborhoods
MF GO:0004298 threonine-type endopeptidase activity IEP Predict GO terms from Neighborhoods
CC GO:0005779 integral component of peroxisomal membrane IEP Predict GO terms from Neighborhoods
CC GO:0005839 proteasome core complex IEP Predict GO terms from Neighborhoods
BP GO:0006066 alcohol metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006637 acyl-CoA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009635 response to herbicide IEP Predict GO terms from Neighborhoods
BP GO:0009636 response to toxic substance IEP Predict GO terms from Neighborhoods
BP GO:0010025 wax biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010166 wax metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010208 pollen wall assembly IEP Predict GO terms from Neighborhoods
BP GO:0010584 pollen exine formation IEP Predict GO terms from Neighborhoods
BP GO:0010927 cellular component assembly involved in morphogenesis IEP Predict GO terms from Neighborhoods
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Predict GO terms from Neighborhoods
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Predict GO terms from Neighborhoods
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predict GO terms from Neighborhoods
CC GO:0019774 proteasome core complex, beta-subunit complex IEP Predict GO terms from Neighborhoods
CC GO:0031231 intrinsic component of peroxisomal membrane IEP Predict GO terms from Neighborhoods
BP GO:0035002 liquid clearance, open tracheal system IEP Predict GO terms from Neighborhoods
BP GO:0035148 tube formation IEP Predict GO terms from Neighborhoods
BP GO:0035149 lumen formation, open tracheal system IEP Predict GO terms from Neighborhoods
BP GO:0035152 regulation of tube architecture, open tracheal system IEP Predict GO terms from Neighborhoods
BP GO:0035336 long-chain fatty-acyl-CoA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0035337 fatty-acyl-CoA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0035383 thioester metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042044 fluid transport IEP Predict GO terms from Neighborhoods
BP GO:0042045 epithelial fluid transport IEP Predict GO terms from Neighborhoods
CC GO:0045177 apical part of cell IEP Predict GO terms from Neighborhoods
BP GO:0045229 external encapsulating structure organization IEP Predict GO terms from Neighborhoods
BP GO:0046165 alcohol biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0046474 glycerophospholipid biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0050062 long-chain-fatty-acyl-CoA reductase activity IEP Predict GO terms from Neighborhoods
MF GO:0070003 threonine-type peptidase activity IEP Predict GO terms from Neighborhoods
BP GO:0070633 transepithelial transport IEP Predict GO terms from Neighborhoods
MF GO:0080019 fatty-acyl-CoA reductase (alcohol-forming) activity IEP Predict GO terms from Neighborhoods
BP GO:1901568 fatty acid derivative metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901570 fatty acid derivative biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1901615 organic hydroxy compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1903173 fatty alcohol metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903175 fatty alcohol biosynthetic process IEP Predict GO terms from Neighborhoods
CC GO:1905368 peptidase complex IEP Predict GO terms from Neighborhoods
CC GO:1905369 endopeptidase complex IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR005162 Retrotrans_gag_dom 103 208
IPR043502 DNA/RNA_pol_sf 1052 1496
IPR012337 RNaseH-like_sf 653 817
IPR013103 RVT_2 1052 1294
IPR001584 Integrase_cat-core 656 756
IPR025724 GAG-pre-integrase_dom 568 642
IPR029472 Copia-like_N 38 83
No external refs found!