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  5. SOLTUB.AGRIA.G00000018206

SOLTUB.AGRIA.G00000018206


Description : Pectate lyase


Gene families : OG_02_0014836 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000018206
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_218


Type GO Term Name Evidence Source
CC GO:0005576 extracellular region IEA AHRD
BP GO:0009624 response to nematode IEA AHRD
MF GO:0030570 pectate lyase activity IEA AHRD
BP GO:0042547 cell wall modification involved in multidimensional cell growth IEA AHRD
BP GO:0045490 pectin catabolic process IEA AHRD
CC GO:0046658 anchored component of plasma membrane IEA AHRD
MF GO:0046872 metal ion binding IEA AHRD
BP GO:0098542 defense response to other organism IEA AHRD
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Type GO Term Name Evidence Source
BP GO:0000003 reproduction IEP Predict GO terms from Neighborhoods
BP GO:0000271 polysaccharide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0000902 cell morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0000916 actomyosin contractile ring contraction IEP Predict GO terms from Neighborhoods
BP GO:0000919 cell plate assembly IEP Predict GO terms from Neighborhoods
BP GO:0001101 response to acid chemical IEP Predict GO terms from Neighborhoods
CC GO:0001725 stress fiber IEP Predict GO terms from Neighborhoods
CC GO:0001726 ruffle IEP Predict GO terms from Neighborhoods
BP GO:0001845 phagolysosome assembly IEP Predict GO terms from Neighborhoods
CC GO:0001891 phagocytic cup IEP Predict GO terms from Neighborhoods
BP GO:0001951 intestinal D-glucose absorption IEP Predict GO terms from Neighborhoods
CC GO:0002102 podosome IEP Predict GO terms from Neighborhoods
BP GO:0002263 cell activation involved in immune response IEP Predict GO terms from Neighborhoods
BP GO:0002285 lymphocyte activation involved in immune response IEP Predict GO terms from Neighborhoods
BP GO:0002286 T cell activation involved in immune response IEP Predict GO terms from Neighborhoods
BP GO:0002366 leukocyte activation involved in immune response IEP Predict GO terms from Neighborhoods
MF GO:0003777 microtubule motor activity IEP Predict GO terms from Neighborhoods
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predict GO terms from Neighborhoods
MF GO:0004709 MAP kinase kinase kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0005178 integrin binding IEP Predict GO terms from Neighborhoods
MF GO:0005200 structural constituent of cytoskeleton IEP Predict GO terms from Neighborhoods
CC GO:0005618 cell wall IEP Predict GO terms from Neighborhoods
CC GO:0005767 secondary lysosome IEP Predict GO terms from Neighborhoods
CC GO:0005829 cytosol IEP Predict GO terms from Neighborhoods
CC GO:0005874 microtubule IEP Predict GO terms from Neighborhoods
CC GO:0005884 actin filament IEP Predict GO terms from Neighborhoods
CC GO:0005903 brush border IEP Predict GO terms from Neighborhoods
CC GO:0005911 cell-cell junction IEP Predict GO terms from Neighborhoods
CC GO:0005925 focal adhesion IEP Predict GO terms from Neighborhoods
CC GO:0005938 cell cortex IEP Predict GO terms from Neighborhoods
BP GO:0006004 fucose metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006026 aminoglycan catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006030 chitin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006032 chitin catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006040 amino sugar metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006073 cellular glucan metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006949 syncytium formation IEP Predict GO terms from Neighborhoods
BP GO:0007040 lysosome organization IEP Predict GO terms from Neighborhoods
BP GO:0007112 male meiosis cytokinesis IEP Predict GO terms from Neighborhoods
BP GO:0007260 tyrosine phosphorylation of STAT protein IEP Predict GO terms from Neighborhoods
BP GO:0007349 cellularization IEP Predict GO terms from Neighborhoods
MF GO:0008810 cellulase activity IEP Predict GO terms from Neighborhoods
BP GO:0009059 macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009414 response to water deprivation IEP Predict GO terms from Neighborhoods
BP GO:0009415 response to water IEP Predict GO terms from Neighborhoods
CC GO:0009505 plant-type cell wall IEP Predict GO terms from Neighborhoods
CC GO:0009506 plasmodesma IEP Predict GO terms from Neighborhoods
BP GO:0009558 embryo sac cellularization IEP Predict GO terms from Neighborhoods
BP GO:0009639 response to red or far red light IEP Predict GO terms from Neighborhoods
BP GO:0009664 plant-type cell wall organization IEP Predict GO terms from Neighborhoods
BP GO:0009719 response to endogenous stimulus IEP Predict GO terms from Neighborhoods
BP GO:0009725 response to hormone IEP Predict GO terms from Neighborhoods
BP GO:0009739 response to gibberellin IEP Predict GO terms from Neighborhoods
BP GO:0009741 response to brassinosteroid IEP Predict GO terms from Neighborhoods
BP GO:0009826 unidimensional cell growth IEP Predict GO terms from Neighborhoods
BP GO:0009827 plant-type cell wall modification IEP Predict GO terms from Neighborhoods
BP GO:0009828 plant-type cell wall loosening IEP Predict GO terms from Neighborhoods
BP GO:0010114 response to red light IEP Predict GO terms from Neighborhoods
BP GO:0010245 radial microtubular system formation IEP Predict GO terms from Neighborhoods
BP GO:0010311 lateral root formation IEP Predict GO terms from Neighborhoods
BP GO:0010337 regulation of salicylic acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010344 seed oilbody biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0010383 cell wall polysaccharide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010395 rhamnogalacturonan I metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010410 hemicellulose metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010411 xyloglucan metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010413 glucuronoxylan metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010417 glucuronoxylan biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010737 protein kinase A signaling IEP Predict GO terms from Neighborhoods
CC GO:0012510 trans-Golgi network transport vesicle membrane IEP Predict GO terms from Neighborhoods
CC GO:0016020 membrane IEP Predict GO terms from Neighborhoods
BP GO:0016049 cell growth IEP Predict GO terms from Neighborhoods
BP GO:0016051 carbohydrate biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0016757 glycosyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predict GO terms from Neighborhoods
MF GO:0016787 hydrolase activity IEP Predict GO terms from Neighborhoods
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predict GO terms from Neighborhoods
BP GO:0019953 sexual reproduction IEP Predict GO terms from Neighborhoods
BP GO:0022600 digestive system process IEP Predict GO terms from Neighborhoods
BP GO:0022617 extracellular matrix disassembly IEP Predict GO terms from Neighborhoods
CC GO:0030027 lamellipodium IEP Predict GO terms from Neighborhoods
BP GO:0030046 parallel actin filament bundle assembly IEP Predict GO terms from Neighborhoods
CC GO:0030054 cell junction IEP Predict GO terms from Neighborhoods
CC GO:0030055 cell-substrate junction IEP Predict GO terms from Neighborhoods
CC GO:0030139 endocytic vesicle IEP Predict GO terms from Neighborhoods
CC GO:0030175 filopodium IEP Predict GO terms from Neighborhoods
BP GO:0030198 extracellular matrix organization IEP Predict GO terms from Neighborhoods
BP GO:0030243 cellulose metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0030245 cellulose catabolic process IEP Predict GO terms from Neighborhoods
MF GO:0030247 polysaccharide binding IEP Predict GO terms from Neighborhoods
CC GO:0030312 external encapsulating structure IEP Predict GO terms from Neighborhoods
CC GO:0030479 actin cortical patch IEP Predict GO terms from Neighborhoods
MF GO:0030599 pectinesterase activity IEP Predict GO terms from Neighborhoods
CC GO:0030658 transport vesicle membrane IEP Predict GO terms from Neighborhoods
CC GO:0030660 Golgi-associated vesicle membrane IEP Predict GO terms from Neighborhoods
CC GO:0030662 coated vesicle membrane IEP Predict GO terms from Neighborhoods
CC GO:0030665 clathrin-coated vesicle membrane IEP Predict GO terms from Neighborhoods
CC GO:0030670 phagocytic vesicle membrane IEP Predict GO terms from Neighborhoods
CC GO:0030863 cortical cytoskeleton IEP Predict GO terms from Neighborhoods
CC GO:0030864 cortical actin cytoskeleton IEP Predict GO terms from Neighborhoods
BP GO:0030866 cortical actin cytoskeleton organization IEP Predict GO terms from Neighborhoods
CC GO:0031097 medial cortex IEP Predict GO terms from Neighborhoods
BP GO:0031156 regulation of sorocarp development IEP Predict GO terms from Neighborhoods
CC GO:0031594 neuromuscular junction IEP Predict GO terms from Neighborhoods
CC GO:0031984 organelle subcompartment IEP Predict GO terms from Neighborhoods
CC GO:0032010 phagolysosome IEP Predict GO terms from Neighborhoods
BP GO:0032091 negative regulation of protein binding IEP Predict GO terms from Neighborhoods
BP GO:0032386 regulation of intracellular transport IEP Predict GO terms from Neighborhoods
CC GO:0032420 stereocilium IEP Predict GO terms from Neighborhoods
CC GO:0032432 actin filament bundle IEP Predict GO terms from Neighborhoods
BP GO:0032502 developmental process IEP Predict GO terms from Neighborhoods
BP GO:0032504 multicellular organism reproduction IEP Predict GO terms from Neighborhoods
BP GO:0032506 cytokinetic process IEP Predict GO terms from Neighborhoods
BP GO:0032530 regulation of microvillus organization IEP Predict GO terms from Neighborhoods
BP GO:0032532 regulation of microvillus length IEP Predict GO terms from Neighborhoods
BP GO:0032536 regulation of cell projection size IEP Predict GO terms from Neighborhoods
BP GO:0033157 regulation of intracellular protein transport IEP Predict GO terms from Neighborhoods
BP GO:0033206 meiotic cytokinesis IEP Predict GO terms from Neighborhoods
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0034315 regulation of Arp2/3 complex-mediated actin nucleation IEP Predict GO terms from Neighborhoods
BP GO:0034316 negative regulation of Arp2/3 complex-mediated actin nucleation IEP Predict GO terms from Neighborhoods
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0036213 contractile ring contraction IEP Predict GO terms from Neighborhoods
BP GO:0036289 peptidyl-serine autophosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0040007 growth IEP Predict GO terms from Neighborhoods
BP GO:0040018 positive regulation of multicellular organism growth IEP Predict GO terms from Neighborhoods
BP GO:0042110 T cell activation IEP Predict GO terms from Neighborhoods
BP GO:0042306 regulation of protein import into nucleus IEP Predict GO terms from Neighborhoods
BP GO:0042307 positive regulation of protein import into nucleus IEP Predict GO terms from Neighborhoods
CC GO:0042641 actomyosin IEP Predict GO terms from Neighborhoods
BP GO:0043062 extracellular structure organization IEP Predict GO terms from Neighborhoods
BP GO:0044036 cell wall macromolecule metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0044038 cell wall macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0044042 glucan metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0044260 cellular macromolecule metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0044262 cellular carbohydrate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0044264 cellular polysaccharide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0044396 actin cortical patch organization IEP Predict GO terms from Neighborhoods
MF GO:0045330 aspartyl esterase activity IEP Predict GO terms from Neighborhoods
CC GO:0045335 phagocytic vesicle IEP Predict GO terms from Neighborhoods
BP GO:0045489 pectin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0046348 amino sugar catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046824 positive regulation of nucleocytoplasmic transport IEP Predict GO terms from Neighborhoods
MF GO:0046910 pectinesterase inhibitor activity IEP Predict GO terms from Neighborhoods
MF GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity IEP Predict GO terms from Neighborhoods
CC GO:0048046 apoplast IEP Predict GO terms from Neighborhoods
BP GO:0048354 mucilage biosynthetic process involved in seed coat development IEP Predict GO terms from Neighborhoods
BP GO:0048363 mucilage pectin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0048589 developmental growth IEP Predict GO terms from Neighborhoods
BP GO:0050829 defense response to Gram-negative bacterium IEP Predict GO terms from Neighborhoods
MF GO:0050839 cell adhesion molecule binding IEP Predict GO terms from Neighborhoods
BP GO:0050892 intestinal absorption IEP Predict GO terms from Neighborhoods
BP GO:0051017 actin filament bundle assembly IEP Predict GO terms from Neighborhoods
BP GO:0051125 regulation of actin nucleation IEP Predict GO terms from Neighborhoods
BP GO:0051126 negative regulation of actin nucleation IEP Predict GO terms from Neighborhoods
BP GO:0051223 regulation of protein transport IEP Predict GO terms from Neighborhoods
BP GO:0051273 beta-glucan metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051275 beta-glucan catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051639 actin filament network formation IEP Predict GO terms from Neighborhoods
BP GO:0051666 actin cortical patch localization IEP Predict GO terms from Neighborhoods
BP GO:0052325 cell wall pectin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0052546 cell wall pectin metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0052689 carboxylic ester hydrolase activity IEP Predict GO terms from Neighborhoods
MF GO:0052793 pectin acetylesterase activity IEP Predict GO terms from Neighborhoods
BP GO:0060088 auditory receptor cell stereocilium organization IEP Predict GO terms from Neighborhoods
BP GO:0060121 vestibular receptor cell stereocilium organization IEP Predict GO terms from Neighborhoods
BP GO:0060122 inner ear receptor cell stereocilium organization IEP Predict GO terms from Neighborhoods
BP GO:0060348 bone development IEP Predict GO terms from Neighborhoods
BP GO:0060560 developmental growth involved in morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0061572 actin filament bundle organization IEP Predict GO terms from Neighborhoods
CC GO:0061645 endocytic patch IEP Predict GO terms from Neighborhoods
CC GO:0070161 anchoring junction IEP Predict GO terms from Neighborhoods
BP GO:0070201 regulation of establishment of protein localization IEP Predict GO terms from Neighborhoods
BP GO:0070589 cellular component macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0070592 cell wall polysaccharide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0070649 formin-nucleated actin cable assembly IEP Predict GO terms from Neighborhoods
BP GO:0070726 cell wall assembly IEP Predict GO terms from Neighborhoods
BP GO:0070925 organelle assembly IEP Predict GO terms from Neighborhoods
BP GO:0071668 plant-type cell wall assembly IEP Predict GO terms from Neighborhoods
BP GO:0071669 plant-type cell wall organization or biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0071801 regulation of podosome assembly IEP Predict GO terms from Neighborhoods
BP GO:0071803 positive regulation of podosome assembly IEP Predict GO terms from Neighborhoods
BP GO:0080022 primary root development IEP Predict GO terms from Neighborhoods
BP GO:0080157 regulation of plant-type cell wall organization or biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0080171 lytic vacuole organization IEP Predict GO terms from Neighborhoods
CC GO:0097517 contractile actin filament bundle IEP Predict GO terms from Neighborhoods
BP GO:0098693 regulation of synaptic vesicle cycle IEP Predict GO terms from Neighborhoods
MF GO:0098699 structural constituent of presynaptic actin cytoskeleton IEP Predict GO terms from Neighborhoods
CC GO:0098791 Golgi apparatus subcompartment IEP Predict GO terms from Neighborhoods
CC GO:0098858 actin-based cell projection IEP Predict GO terms from Neighborhoods
CC GO:0098862 cluster of actin-based cell projections IEP Predict GO terms from Neighborhoods
MF GO:0098918 structural constituent of synapse IEP Predict GO terms from Neighborhoods
CC GO:0099079 actin body IEP Predict GO terms from Neighborhoods
CC GO:0099080 supramolecular complex IEP Predict GO terms from Neighborhoods
CC GO:0099081 supramolecular polymer IEP Predict GO terms from Neighborhoods
MF GO:0099181 structural constituent of presynapse IEP Predict GO terms from Neighborhoods
CC GO:0099512 supramolecular fiber IEP Predict GO terms from Neighborhoods
CC GO:0099513 polymeric cytoskeletal fiber IEP Predict GO terms from Neighborhoods
CC GO:0099738 cell cortex region IEP Predict GO terms from Neighborhoods
BP GO:0106001 intestinal hexose absorption IEP Predict GO terms from Neighborhoods
BP GO:0106027 neuron projection organization IEP Predict GO terms from Neighborhoods
BP GO:0110009 formin-nucleated actin cable organization IEP Predict GO terms from Neighborhoods
CC GO:0120106 mitotic actomyosin contractile ring, distal actin filament layer IEP Predict GO terms from Neighborhoods
BP GO:1900182 positive regulation of protein localization to nucleus IEP Predict GO terms from Neighborhoods
BP GO:1901071 glucosamine-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901072 glucosamine-containing compound catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1902117 positive regulation of organelle assembly IEP Predict GO terms from Neighborhoods
BP GO:1902404 mitotic actomyosin contractile ring contraction IEP Predict GO terms from Neighborhoods
BP GO:1902410 mitotic cytokinetic process IEP Predict GO terms from Neighborhoods
BP GO:1902896 terminal web assembly IEP Predict GO terms from Neighborhoods
BP GO:1903078 positive regulation of protein localization to plasma membrane IEP Predict GO terms from Neighborhoods
BP GO:1903829 positive regulation of protein localization IEP Predict GO terms from Neighborhoods
BP GO:1904377 positive regulation of protein localization to cell periphery IEP Predict GO terms from Neighborhoods
BP GO:1904529 regulation of actin filament binding IEP Predict GO terms from Neighborhoods
BP GO:1904530 negative regulation of actin filament binding IEP Predict GO terms from Neighborhoods
BP GO:1904616 regulation of actin binding IEP Predict GO terms from Neighborhoods
BP GO:1904617 negative regulation of actin binding IEP Predict GO terms from Neighborhoods
BP GO:1904892 regulation of receptor signaling pathway via STAT IEP Predict GO terms from Neighborhoods
BP GO:1904894 positive regulation of receptor signaling pathway via STAT IEP Predict GO terms from Neighborhoods
BP GO:1905393 plant organ formation IEP Predict GO terms from Neighborhoods
BP GO:1905477 positive regulation of protein localization to membrane IEP Predict GO terms from Neighborhoods
CC GO:1990357 terminal web IEP Predict GO terms from Neighborhoods
BP GO:2000035 regulation of stem cell division IEP Predict GO terms from Neighborhoods
BP GO:2000069 regulation of post-embryonic root development IEP Predict GO terms from Neighborhoods
BP GO:2000280 regulation of root development IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR011050 Pectin_lyase_fold/virulence 54 392
IPR002022 Pec_lyase 133 318
No external refs found!