SOLTUB.AGRIA.G00000018582

Description : Nucleosome assembly protein 1;1

Gene families : OG_02_0001600 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000018582
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_611

Target	Alias	Description	ECC score	Gene Family Method
SOLTUB.AGRIA.G00000018561	No alias	Nucleosome assembly protein 1;1	0.14	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000042925	No alias	Nucleosome assembly protein 1;1	0.2	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000018561	No alias	Nucleosome assembly protein 1;1	0.14	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000042925	No alias	Nucleosome assembly protein 1;1	0.2	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000018561	No alias	Nucleosome assembly protein 1;1	0.14	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000042925	No alias	Nucleosome assembly protein 1;1	0.2	Orthogroups with 8 Potato genotypes

Type	GO Term	Name	Evidence	Source
BP	GO:0000724	double-strand break repair via homologous recombination	IEA	AHRD
BP	GO:0000725	recombinational repair	None	Extended
CC	GO:0000785	chromatin	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003682	chromatin binding	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	AHRD
CC	GO:0005829	cytosol	IEA	AHRD
CC	GO:0005886	plasma membrane	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006302	double-strand break repair	None	Extended
BP	GO:0006310	DNA recombination	None	Extended
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006334	nucleosome assembly	IEA	AHRD
BP	GO:0006338	chromatin remodeling	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009292	horizontal gene transfer	None	Extended
BP	GO:0009294	DNA-mediated transformation	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010038	response to metal ion	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016444	somatic cell DNA recombination	IEA	AHRD
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0030154	cell differentiation	IEA	AHRD
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034728	nucleosome organization	None	Extended
BP	GO:0042221	response to chemical	None	Extended
MF	GO:0042393	histone binding	IEA	AHRD
MF	GO:0042802	identical protein binding	IEA	AHRD
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046686	response to cadmium ion	IEA	AHRD
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	IEA	AHRD
BP	GO:0048731	system development	IEA	AHRD
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065004	protein-DNA complex assembly	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071824	protein-DNA complex subunit organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000028	ribosomal small subunit assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0000082	G1/S transition of mitotic cell cycle	IEP	Predict GO terms from Neighborhoods
CC	GO:0000775	chromosome, centromeric region	IEP	Predict GO terms from Neighborhoods
CC	GO:0000792	heterochromatin	IEP	Predict GO terms from Neighborhoods
BP	GO:0001775	cell activation	IEP	Predict GO terms from Neighborhoods
BP	GO:0001890	placenta development	IEP	Predict GO terms from Neighborhoods
BP	GO:0002252	immune effector process	IEP	Predict GO terms from Neighborhoods
BP	GO:0002263	cell activation involved in immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002285	lymphocyte activation involved in immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002286	T cell activation involved in immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002309	T cell proliferation involved in immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002366	leukocyte activation involved in immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002521	leukocyte differentiation	IEP	Predict GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003735	structural constituent of ribosome	IEP	Predict GO terms from Neighborhoods
MF	GO:0005198	structural molecule activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005840	ribosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0006346	DNA methylation-dependent heterochromatin formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006412	translation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006479	protein methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006518	peptide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006915	apoptotic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006924	activation-induced cell death of T cells	IEP	Predict GO terms from Neighborhoods
BP	GO:0007369	gastrulation	IEP	Predict GO terms from Neighborhoods
BP	GO:0008213	protein alkylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0008283	cell population proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:0009059	macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0015934	large ribosomal subunit	IEP	Predict GO terms from Neighborhoods
CC	GO:0015935	small ribosomal subunit	IEP	Predict GO terms from Neighborhoods
BP	GO:0016571	histone methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0018022	peptidyl-lysine methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0018027	peptidyl-lysine dimethylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0019538	protein metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0019843	rRNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0022605	mammalian oogenesis stage	IEP	Predict GO terms from Neighborhoods
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0022625	cytosolic large ribosomal subunit	IEP	Predict GO terms from Neighborhoods
CC	GO:0022627	cytosolic small ribosomal subunit	IEP	Predict GO terms from Neighborhoods
BP	GO:0030098	lymphocyte differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0030217	T cell differentiation	IEP	Predict GO terms from Neighborhoods
CC	GO:0030425	dendrite	IEP	Predict GO terms from Neighborhoods
BP	GO:0031507	heterochromatin formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0031929	TOR signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0032868	response to insulin	IEP	Predict GO terms from Neighborhoods
BP	GO:0032943	mononuclear cell proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:0033077	T cell differentiation in thymus	IEP	Predict GO terms from Neighborhoods
BP	GO:0033500	carbohydrate homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034968	histone lysine methylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0035064	methylated histone binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0036123	histone H3-K9 dimethylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0040029	epigenetic regulation of gene expression	IEP	Predict GO terms from Neighborhoods
BP	GO:0042098	T cell proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:0042110	T cell activation	IEP	Predict GO terms from Neighborhoods
BP	GO:0042593	glucose homeostasis	IEP	Predict GO terms from Neighborhoods
CC	GO:0042788	polysomal ribosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0043043	peptide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043065	positive regulation of apoptotic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043434	response to peptide hormone	IEP	Predict GO terms from Neighborhoods
BP	GO:0043603	cellular amide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043604	amide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044030	regulation of DNA methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0044297	cell body	IEP	Predict GO terms from Neighborhoods
CC	GO:0044391	ribosomal subunit	IEP	Predict GO terms from Neighborhoods
BP	GO:0044770	cell cycle phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:0044772	mitotic cell cycle phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:0044843	cell cycle G1/S phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:0045321	leukocyte activation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045471	response to ethanol	IEP	Predict GO terms from Neighborhoods
BP	GO:0045814	negative regulation of gene expression, epigenetic	IEP	Predict GO terms from Neighborhoods
BP	GO:0046649	lymphocyte activation	IEP	Predict GO terms from Neighborhoods
BP	GO:0046651	lymphocyte proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:0048598	embryonic morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0048821	erythrocyte development	IEP	Predict GO terms from Neighborhoods
BP	GO:0051567	histone H3-K9 methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0061515	myeloid cell development	IEP	Predict GO terms from Neighborhoods
BP	GO:0061647	histone H3-K9 modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0070227	lymphocyte apoptotic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0070231	T cell apoptotic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0070661	leukocyte proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:0070828	heterochromatin organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0071361	cellular response to ethanol	IEP	Predict GO terms from Neighborhoods
BP	GO:0071887	leukocyte apoptotic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0097306	cellular response to alcohol	IEP	Predict GO terms from Neighborhoods
CC	GO:0098687	chromosomal region	IEP	Predict GO terms from Neighborhoods
MF	GO:0140030	modification-dependent protein binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0140034	methylation-dependent protein binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0140718	facultative heterochromatin formation	IEP	Predict GO terms from Neighborhoods
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901652	response to peptide	IEP	Predict GO terms from Neighborhoods
BP	GO:1901888	regulation of cell junction assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:1901889	negative regulation of cell junction assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:1903131	mononuclear cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:1903347	negative regulation of bicellular tight junction assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:1990904	ribonucleoprotein complex	IEP	Predict GO terms from Neighborhoods
BP	GO:2000810	regulation of bicellular tight junction assembly	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR037231	NAP-like_sf	29	334
IPR002164	NAP_family	82	335

External Links

No external refs found!

SOLTUB.AGRIA.G00000018582

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation