SOLTUB.AGRIA.G00000018698

Description : Ribosome-binding factor A

Gene families : OG_02_0007800 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000018698
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_105

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	AHRD
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
CC	GO:0009507	chloroplast	IEA	AHRD
CC	GO:0009536	plastid	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000775	chromosome, centromeric region	IEP	Predict GO terms from Neighborhoods
BP	GO:0001570	vasculogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0001676	long-chain fatty acid metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0003727	single-stranded RNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0005484	SNAP receptor activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005788	endoplasmic reticulum lumen	IEP	Predict GO terms from Neighborhoods
CC	GO:0005798	Golgi-associated vesicle	IEP	Predict GO terms from Neighborhoods
BP	GO:0006896	Golgi to vacuole transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0007272	ensheathment of neurons	IEP	Predict GO terms from Neighborhoods
BP	GO:0007286	spermatid development	IEP	Predict GO terms from Neighborhoods
BP	GO:0007613	memory	IEP	Predict GO terms from Neighborhoods
BP	GO:0007616	long-term memory	IEP	Predict GO terms from Neighborhoods
CC	GO:0008021	synaptic vesicle	IEP	Predict GO terms from Neighborhoods
BP	GO:0008258	head involution	IEP	Predict GO terms from Neighborhoods
BP	GO:0008366	axon ensheathment	IEP	Predict GO terms from Neighborhoods
BP	GO:0009306	protein secretion	IEP	Predict GO terms from Neighborhoods
BP	GO:0009660	amyloplast organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0009959	negative gravitropism	IEP	Predict GO terms from Neighborhoods
BP	GO:0010656	negative regulation of muscle cell apoptotic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010660	regulation of muscle cell apoptotic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010662	regulation of striated muscle cell apoptotic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010664	negative regulation of striated muscle cell apoptotic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010665	regulation of cardiac muscle cell apoptotic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010667	negative regulation of cardiac muscle cell apoptotic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010976	positive regulation of neuron projection development	IEP	Predict GO terms from Neighborhoods
BP	GO:0014013	regulation of gliogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0014015	positive regulation of gliogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0014028	notochord formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0014866	skeletal myofibril assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0019905	syntaxin binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0022406	membrane docking	IEP	Predict GO terms from Neighborhoods
CC	GO:0030140	trans-Golgi network transport vesicle	IEP	Predict GO terms from Neighborhoods
BP	GO:0030239	myofibril assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0030534	adult behavior	IEP	Predict GO terms from Neighborhoods
BP	GO:0031032	actomyosin structure organization	IEP	Predict GO terms from Neighborhoods
CC	GO:0031201	SNARE complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0031594	neuromuscular junction	IEP	Predict GO terms from Neighborhoods
CC	GO:0031977	thylakoid lumen	IEP	Predict GO terms from Neighborhoods
CC	GO:0031985	Golgi cisterna	IEP	Predict GO terms from Neighborhoods
BP	GO:0034086	maintenance of sister chromatid cohesion	IEP	Predict GO terms from Neighborhoods
BP	GO:0034090	maintenance of meiotic sister chromatid cohesion	IEP	Predict GO terms from Neighborhoods
BP	GO:0035592	establishment of protein localization to extracellular region	IEP	Predict GO terms from Neighborhoods
BP	GO:0042058	regulation of epidermal growth factor receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0042059	negative regulation of epidermal growth factor receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0042552	myelination	IEP	Predict GO terms from Neighborhoods
BP	GO:0042759	long-chain fatty acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0043195	terminal bouton	IEP	Predict GO terms from Neighborhoods
BP	GO:0043487	regulation of RNA stability	IEP	Predict GO terms from Neighborhoods
BP	GO:0043488	regulation of mRNA stability	IEP	Predict GO terms from Neighborhoods
BP	GO:0043489	RNA stabilization	IEP	Predict GO terms from Neighborhoods
MF	GO:0044692	exoribonuclease activator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0044788	modulation by host of viral process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044794	positive regulation by host of viral process	IEP	Predict GO terms from Neighborhoods
CC	GO:0045202	synapse	IEP	Predict GO terms from Neighborhoods
BP	GO:0045324	late endosome to vacuole transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0045685	regulation of glial cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045687	positive regulation of glial cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0048149	behavioral response to ethanol	IEP	Predict GO terms from Neighborhoods
BP	GO:0048255	mRNA stabilization	IEP	Predict GO terms from Neighborhoods
BP	GO:0048278	vesicle docking	IEP	Predict GO terms from Neighborhoods
BP	GO:0048577	negative regulation of short-day photoperiodism, flowering	IEP	Predict GO terms from Neighborhoods
BP	GO:0048587	regulation of short-day photoperiodism, flowering	IEP	Predict GO terms from Neighborhoods
BP	GO:0048713	regulation of oligodendrocyte differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0048714	positive regulation of oligodendrocyte differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0048813	dendrite morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0050779	RNA destabilization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051851	modulation by host of symbiont process	IEP	Predict GO terms from Neighborhoods
CC	GO:0055037	recycling endosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0060034	notochord cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0061013	regulation of mRNA catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0061157	mRNA destabilization	IEP	Predict GO terms from Neighborhoods
BP	GO:0061158	3'-UTR-mediated mRNA destabilization	IEP	Predict GO terms from Neighborhoods
CC	GO:0061174	type I terminal bouton	IEP	Predict GO terms from Neighborhoods
CC	GO:0061177	type Is terminal bouton	IEP	Predict GO terms from Neighborhoods
BP	GO:0070925	organelle assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0071598	neuronal ribonucleoprotein granule	IEP	Predict GO terms from Neighborhoods
BP	GO:0071692	protein localization to extracellular region	IEP	Predict GO terms from Neighborhoods
BP	GO:0090161	Golgi ribbon formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0140056	organelle localization by membrane tethering	IEP	Predict GO terms from Neighborhoods
BP	GO:1901184	regulation of ERBB signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:1901185	negative regulation of ERBB signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:1902039	negative regulation of seed dormancy process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902373	negative regulation of mRNA catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903311	regulation of mRNA metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:1905762	CCR4-NOT complex binding	IEP	Predict GO terms from Neighborhoods
BP	GO:2000033	regulation of seed dormancy process	IEP	Predict GO terms from Neighborhoods
BP	GO:2000242	negative regulation of reproductive process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR023799	RbfA_dom_sf	28	86
IPR000238	RbfA	28	86

External Links

No external refs found!

SOLTUB.AGRIA.G00000018698

Expression Profile

Co-expression Networks

Functional Annotation