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  5. SOLTUB.AGRIA.G00000019435

SOLTUB.AGRIA.G00000019435


Description : Rhamnogalacturonate lyase


Gene families : OG_02_0009243 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000019435
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_143


Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEA AHRD
MF GO:0003824 catalytic activity IEA AHRD
CC GO:0005575 cellular_component IEA AHRD
CC GO:0005576 extracellular region IEA AHRD
BP GO:0005975 carbohydrate metabolic process IEA AHRD
MF GO:0016829 lyase activity IEA AHRD
MF GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides IEA AHRD
MF GO:0030246 carbohydrate binding IEA AHRD
BP GO:0045490 pectin catabolic process IEA AHRD
BP GO:0071555 cell wall organization IEA AHRD
MF GO:0102210 rhamnogalacturonan endolyase activity IEA AHRD
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Type GO Term Name Evidence Source
BP GO:0001666 response to hypoxia IEP Predict GO terms from Neighborhoods
BP GO:0002221 pattern recognition receptor signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0002240 response to molecule of oomycetes origin IEP Predict GO terms from Neighborhoods
MF GO:0004383 guanylate cyclase activity IEP Predict GO terms from Neighborhoods
MF GO:0004497 monooxygenase activity IEP Predict GO terms from Neighborhoods
MF GO:0004564 beta-fructofuranosidase activity IEP Predict GO terms from Neighborhoods
MF GO:0004575 sucrose alpha-glucosidase activity IEP Predict GO terms from Neighborhoods
MF GO:0004857 enzyme inhibitor activity IEP Predict GO terms from Neighborhoods
MF GO:0004866 endopeptidase inhibitor activity IEP Predict GO terms from Neighborhoods
MF GO:0004867 serine-type endopeptidase inhibitor activity IEP Predict GO terms from Neighborhoods
MF GO:0005315 inorganic phosphate transmembrane transporter activity IEP Predict GO terms from Neighborhoods
CC GO:0005618 cell wall IEP Predict GO terms from Neighborhoods
CC GO:0005911 cell-cell junction IEP Predict GO terms from Neighborhoods
BP GO:0005987 sucrose catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006720 isoprenoid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006721 terpenoid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006836 neurotransmitter transport IEP Predict GO terms from Neighborhoods
BP GO:0006869 lipid transport IEP Predict GO terms from Neighborhoods
BP GO:0006950 response to stress IEP Predict GO terms from Neighborhoods
BP GO:0006952 defense response IEP Predict GO terms from Neighborhoods
BP GO:0006979 response to oxidative stress IEP Predict GO terms from Neighborhoods
BP GO:0008299 isoprenoid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009058 biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009313 oligosaccharide catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009314 response to radiation IEP Predict GO terms from Neighborhoods
BP GO:0009411 response to UV IEP Predict GO terms from Neighborhoods
BP GO:0009416 response to light stimulus IEP Predict GO terms from Neighborhoods
CC GO:0009505 plant-type cell wall IEP Predict GO terms from Neighborhoods
CC GO:0009506 plasmodesma IEP Predict GO terms from Neighborhoods
BP GO:0009595 detection of biotic stimulus IEP Predict GO terms from Neighborhoods
BP GO:0009605 response to external stimulus IEP Predict GO terms from Neighborhoods
BP GO:0009607 response to biotic stimulus IEP Predict GO terms from Neighborhoods
BP GO:0009620 response to fungus IEP Predict GO terms from Neighborhoods
BP GO:0009628 response to abiotic stimulus IEP Predict GO terms from Neighborhoods
BP GO:0009643 photosynthetic acclimation IEP Predict GO terms from Neighborhoods
BP GO:0009697 salicylic acid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009698 phenylpropanoid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009699 phenylpropanoid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009717 isoflavonoid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009734 auxin-activated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0009753 response to jasmonic acid IEP Predict GO terms from Neighborhoods
BP GO:0009808 lignin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009809 lignin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010028 xanthophyll cycle IEP Predict GO terms from Neighborhoods
BP GO:0010045 response to nickel cation IEP Predict GO terms from Neighborhoods
BP GO:0010117 photoprotection IEP Predict GO terms from Neighborhoods
BP GO:0010224 response to UV-B IEP Predict GO terms from Neighborhoods
BP GO:0010249 auxin conjugate metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0010279 indole-3-acetic acid amido synthetase activity IEP Predict GO terms from Neighborhoods
BP GO:0010310 regulation of hydrogen peroxide metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0010333 terpene synthase activity IEP Predict GO terms from Neighborhoods
BP GO:0010466 negative regulation of peptidase activity IEP Predict GO terms from Neighborhoods
BP GO:0010726 positive regulation of hydrogen peroxide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010728 regulation of hydrogen peroxide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010729 positive regulation of hydrogen peroxide biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0015229 L-ascorbic acid transmembrane transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0015882 L-ascorbic acid transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:0016046 detection of fungus IEP Predict GO terms from Neighborhoods
BP GO:0016122 xanthophyll metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0016208 AMP binding IEP Predict GO terms from Neighborhoods
MF GO:0016491 oxidoreductase activity IEP Predict GO terms from Neighborhoods
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predict GO terms from Neighborhoods
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predict GO terms from Neighborhoods
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predict GO terms from Neighborhoods
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Predict GO terms from Neighborhoods
MF GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen IEP Predict GO terms from Neighborhoods
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Predict GO terms from Neighborhoods
MF GO:0016881 acid-amino acid ligase activity IEP Predict GO terms from Neighborhoods
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Predict GO terms from Neighborhoods
BP GO:0018874 benzoate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0018958 phenol-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0018973 trinitrotoluene metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0018974 2,4,6-trinitrotoluene metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019326 nitrotoluene metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019438 aromatic compound biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0019748 secondary metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0030162 regulation of proteolysis IEP Predict GO terms from Neighborhoods
MF GO:0030234 enzyme regulator activity IEP Predict GO terms from Neighborhoods
CC GO:0030312 external encapsulating structure IEP Predict GO terms from Neighborhoods
MF GO:0030414 peptidase inhibitor activity IEP Predict GO terms from Neighborhoods
BP GO:0032497 detection of lipopolysaccharide IEP Predict GO terms from Neighborhoods
MF GO:0033987 2-hydroxyisoflavanone dehydratase activity IEP Predict GO terms from Neighborhoods
BP GO:0033993 response to lipid IEP Predict GO terms from Neighborhoods
MF GO:0034003 vetispiradiene synthase activity IEP Predict GO terms from Neighborhoods
BP GO:0035461 vitamin transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:0036293 response to decreased oxygen levels IEP Predict GO terms from Neighborhoods
BP GO:0036294 cellular response to decreased oxygen levels IEP Predict GO terms from Neighborhoods
MF GO:0038187 pattern recognition receptor activity IEP Predict GO terms from Neighborhoods
BP GO:0042214 terpene metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042221 response to chemical IEP Predict GO terms from Neighborhoods
BP GO:0042537 benzene-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042631 cellular response to water deprivation IEP Predict GO terms from Neighborhoods
BP GO:0042762 regulation of sulfur metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0043086 negative regulation of catalytic activity IEP Predict GO terms from Neighborhoods
MF GO:0043167 ion binding IEP Predict GO terms from Neighborhoods
MF GO:0043168 anion binding IEP Predict GO terms from Neighborhoods
BP GO:0043207 response to external biotic stimulus IEP Predict GO terms from Neighborhoods
BP GO:0044092 negative regulation of molecular function IEP Predict GO terms from Neighborhoods
CC GO:0044232 organelle membrane contact site IEP Predict GO terms from Neighborhoods
BP GO:0044419 biological process involved in interspecies interaction between organisms IEP Predict GO terms from Neighborhoods
BP GO:0044550 secondary metabolite biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0045339 farnesyl diphosphate catabolic process IEP Predict GO terms from Neighborhoods
MF GO:0045551 cinnamyl-alcohol dehydrogenase activity IEP Predict GO terms from Neighborhoods
BP GO:0045861 negative regulation of proteolysis IEP Predict GO terms from Neighborhoods
BP GO:0046189 phenol-containing compound biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0046246 terpene biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0046256 2,4,6-trinitrotoluene catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046260 trinitrotoluene catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046263 nitrotoluene catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046287 isoflavonoid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046352 disaccharide catabolic process IEP Predict GO terms from Neighborhoods
MF GO:0047517 1,4-beta-D-xylan synthase activity IEP Predict GO terms from Neighborhoods
CC GO:0048046 apoplast IEP Predict GO terms from Neighborhoods
MF GO:0050268 coniferyl-alcohol dehydrogenase activity IEP Predict GO terms from Neighborhoods
MF GO:0050660 flavin adenine dinucleotide binding IEP Predict GO terms from Neighborhoods
BP GO:0050830 defense response to Gram-positive bacterium IEP Predict GO terms from Neighborhoods
BP GO:0050832 defense response to fungus IEP Predict GO terms from Neighborhoods
BP GO:0050896 response to stimulus IEP Predict GO terms from Neighborhoods
BP GO:0051176 positive regulation of sulfur metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051248 negative regulation of protein metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051336 regulation of hydrolase activity IEP Predict GO terms from Neighborhoods
BP GO:0051346 negative regulation of hydrolase activity IEP Predict GO terms from Neighborhoods
BP GO:0051707 response to other organism IEP Predict GO terms from Neighborhoods
BP GO:0051761 sesquiterpene metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051762 sesquiterpene biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0052318 regulation of phytoalexin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0052319 regulation of phytoalexin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0052320 positive regulation of phytoalexin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0052322 positive regulation of phytoalexin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0052547 regulation of peptidase activity IEP Predict GO terms from Neighborhoods
BP GO:0052575 carbohydrate localization IEP Predict GO terms from Neighborhoods
BP GO:0052576 carbohydrate storage IEP Predict GO terms from Neighborhoods
MF GO:0052625 4-aminobenzoate amino acid synthetase activity IEP Predict GO terms from Neighborhoods
MF GO:0052626 benzoate amino acid synthetase activity IEP Predict GO terms from Neighborhoods
MF GO:0052627 vanillate amino acid synthetase activity IEP Predict GO terms from Neighborhoods
MF GO:0052628 4-hydroxybenzoate amino acid synthetase activity IEP Predict GO terms from Neighborhoods
MF GO:0061134 peptidase regulator activity IEP Predict GO terms from Neighborhoods
MF GO:0061135 endopeptidase regulator activity IEP Predict GO terms from Neighborhoods
MF GO:0062131 3-butenylglucosinolate 2-hydroxylase activity IEP Predict GO terms from Neighborhoods
CC GO:0070161 anchoring junction IEP Predict GO terms from Neighborhoods
MF GO:0070406 glutamine binding IEP Predict GO terms from Neighborhoods
BP GO:0070482 response to oxygen levels IEP Predict GO terms from Neighborhoods
BP GO:0070542 response to fatty acid IEP Predict GO terms from Neighborhoods
BP GO:0070887 cellular response to chemical stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071229 cellular response to acid chemical IEP Predict GO terms from Neighborhoods
BP GO:0071289 cellular response to nickel ion IEP Predict GO terms from Neighborhoods
BP GO:0071453 cellular response to oxygen levels IEP Predict GO terms from Neighborhoods
BP GO:0071456 cellular response to hypoxia IEP Predict GO terms from Neighborhoods
BP GO:0071462 cellular response to water stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071836 nectar secretion IEP Predict GO terms from Neighborhoods
BP GO:0072490 toluene-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0072491 toluene-containing compound catabolic process IEP Predict GO terms from Neighborhoods
MF GO:0090482 vitamin transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0090599 alpha-glucosidase activity IEP Predict GO terms from Neighborhoods
BP GO:0098581 detection of external biotic stimulus IEP Predict GO terms from Neighborhoods
MF GO:0102627 parthenolide 3beta-hydroxylase activity IEP Predict GO terms from Neighborhoods
MF GO:0102628 costunolide 3beta-hydroxylase activity IEP Predict GO terms from Neighborhoods
MF GO:0102698 5-epi-aristolochene synthase activity IEP Predict GO terms from Neighborhoods
MF GO:0106223 germacrene A hydroxylase activity IEP Predict GO terms from Neighborhoods
BP GO:0120251 hydrocarbon biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0120252 hydrocarbon metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0140426 PAMP-triggered immunity signalling pathway IEP Predict GO terms from Neighborhoods
BP GO:1900376 regulation of secondary metabolite biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1901182 regulation of camalexin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1901183 positive regulation of camalexin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1901576 organic substance biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1901696 cannabinoid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1903426 regulation of reactive oxygen species biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1903428 positive regulation of reactive oxygen species biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:2000377 regulation of reactive oxygen species metabolic process IEP Predict GO terms from Neighborhoods
BP GO:2000379 positive regulation of reactive oxygen species metabolic process IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR029411 RG-lyase_III 489 677
IPR013784 Carb-bd-like_fold 377 476
IPR011013 Gal_mutarotase_sf_dom 61 347
IPR008979 Galactose-bd-like_sf 486 678
IPR010325 Rhamnogal_lyase 53 250
IPR029413 RG-lyase_II 403 476
No external refs found!