SOLTUB.AGRIA.G00000002035

Description : Chromodomain helicase-DNA-binding-like protein

Gene families : OG_02_0006149 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000002035
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_324

Type	GO Term	Name	Evidence	Source
BP	GO:0000122	negative regulation of transcription by RNA polymerase II	IEA	AHRD
MF	GO:0000166	nucleotide binding	None	Extended
CC	GO:0000775	chromosome, centromeric region	None	Extended
CC	GO:0000779	condensed chromosome, centromeric region	IEA	AHRD
CC	GO:0000785	chromatin	IEA	AHRD
MF	GO:0000976	transcription cis-regulatory region binding	None	Extended
MF	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding	None	Extended
MF	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	IEA	AHRD
MF	GO:0000987	cis-regulatory region sequence-specific DNA binding	None	Extended
MF	GO:0001067	transcription regulatory region nucleic acid binding	None	Extended
MF	GO:0001221	transcription coregulator binding	IEA	AHRD
BP	GO:0001501	skeletal system development	IEA	AHRD
BP	GO:0001701	in utero embryonic development	IEA	AHRD
BP	GO:0001775	cell activation	None	Extended
BP	GO:0001974	blood vessel remodeling	IEA	AHRD
MF	GO:0002039	p53 binding	IEA	AHRD
BP	GO:0002376	immune system process	None	Extended
BP	GO:0002521	leukocyte differentiation	None	Extended
BP	GO:0002791	regulation of peptide secretion	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
BP	GO:0003008	system process	None	Extended
BP	GO:0003013	circulatory system process	None	Extended
BP	GO:0003221	right ventricular cardiac muscle tissue morphogenesis	None	Extended
BP	GO:0003222	ventricular trabecula myocardium morphogenesis	IEA	AHRD
BP	GO:0003223	ventricular compact myocardium morphogenesis	None	Extended
BP	GO:0003226	right ventricular compact myocardium morphogenesis	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003678	DNA helicase activity	None	Extended
MF	GO:0003682	chromatin binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
MF	GO:0005524	ATP binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005703	polytene chromosome puff	IEA	AHRD
CC	GO:0005705	polytene chromosome interband	IEA	AHRD
CC	GO:0005730	nucleolus	IEA	AHRD
CC	GO:0005829	cytosol	IEA	AHRD
CC	GO:0005886	plasma membrane	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	IEA	AHRD
BP	GO:0006353	DNA-templated transcription termination	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0006357	regulation of transcription by RNA polymerase II	None	Extended
BP	GO:0006359	regulation of transcription by RNA polymerase III	None	Extended
BP	GO:0006369	termination of RNA polymerase II transcription	IEA	AHRD
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0007276	gamete generation	None	Extended
BP	GO:0007281	germ cell development	None	Extended
BP	GO:0007292	female gamete generation	None	Extended
BP	GO:0007423	sensory organ development	None	Extended
BP	GO:0007476	imaginal disc-derived wing morphogenesis	IEA	AHRD
BP	GO:0007507	heart development	None	Extended
BP	GO:0007512	adult heart development	IEA	AHRD
BP	GO:0007600	sensory perception	None	Extended
BP	GO:0007605	sensory perception of sound	IEA	AHRD
BP	GO:0007610	behavior	None	Extended
BP	GO:0007626	locomotory behavior	None	Extended
BP	GO:0007628	adult walking behavior	IEA	AHRD
BP	GO:0007635	chemosensory behavior	None	Extended
MF	GO:0008013	beta-catenin binding	IEA	AHRD
BP	GO:0008015	blood circulation	IEA	AHRD
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
MF	GO:0008134	transcription factor binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008285	negative regulation of cell population proliferation	None	Extended
BP	GO:0008344	adult locomotory behavior	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009617	response to bacterium	IEA	AHRD
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009792	embryo development ending in birth or egg hatching	None	Extended
BP	GO:0009886	post-embryonic animal morphogenesis	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009890	negative regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009966	regulation of signal transduction	None	Extended
BP	GO:0009968	negative regulation of signal transduction	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010646	regulation of cell communication	None	Extended
BP	GO:0010648	negative regulation of cell communication	None	Extended
BP	GO:0010817	regulation of hormone levels	None	Extended
BP	GO:0010880	regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum	IEA	AHRD
BP	GO:0010941	regulation of cell death	None	Extended
BP	GO:0010959	regulation of metal ion transport	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017116	single-stranded DNA helicase activity	IEA	AHRD
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
MF	GO:0019904	protein domain specific binding	None	Extended
BP	GO:0021545	cranial nerve development	None	Extended
BP	GO:0021553	olfactory nerve development	IEA	AHRD
BP	GO:0021675	nerve development	None	Extended
BP	GO:0021772	olfactory bulb development	IEA	AHRD
BP	GO:0022412	cellular process involved in reproduction in multicellular organism	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0023051	regulation of signaling	None	Extended
BP	GO:0023057	negative regulation of signaling	None	Extended
BP	GO:0030098	lymphocyte differentiation	None	Extended
BP	GO:0030111	regulation of Wnt signaling pathway	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
BP	GO:0030178	negative regulation of Wnt signaling pathway	None	Extended
BP	GO:0030217	T cell differentiation	IEA	AHRD
BP	GO:0030326	embryonic limb morphogenesis	None	Extended
BP	GO:0030534	adult behavior	None	Extended
BP	GO:0030540	female genitalia development	IEA	AHRD
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0030901	midbrain development	IEA	AHRD
BP	GO:0031056	regulation of histone modification	None	Extended
BP	GO:0031057	negative regulation of histone modification	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031327	negative regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0031399	regulation of protein modification process	None	Extended
BP	GO:0031400	negative regulation of protein modification process	None	Extended
BP	GO:0032101	regulation of response to external stimulus	None	Extended
BP	GO:0032102	negative regulation of response to external stimulus	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0032879	regulation of localization	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
CC	GO:0034708	methyltransferase complex	None	Extended
BP	GO:0034762	regulation of transmembrane transport	None	Extended
BP	GO:0034765	regulation of ion transmembrane transport	None	Extended
BP	GO:0035042	obsolete fertilization, exchange of chromosomal proteins	IEA	AHRD
MF	GO:0035064	methylated histone binding	IEA	AHRD
BP	GO:0035065	regulation of histone acetylation	None	Extended
BP	GO:0035067	negative regulation of histone acetylation	IEA	AHRD
CC	GO:0035097	histone methyltransferase complex	None	Extended
BP	GO:0035107	appendage morphogenesis	None	Extended
BP	GO:0035108	limb morphogenesis	None	Extended
BP	GO:0035113	embryonic appendage morphogenesis	None	Extended
BP	GO:0035114	imaginal disc-derived appendage morphogenesis	None	Extended
BP	GO:0035116	embryonic hindlimb morphogenesis	IEA	AHRD
BP	GO:0035120	post-embryonic appendage morphogenesis	None	Extended
BP	GO:0035137	hindlimb morphogenesis	None	Extended
BP	GO:0035176	social behavior	IEA	AHRD
BP	GO:0035239	tube morphogenesis	None	Extended
BP	GO:0035295	tube development	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
BP	GO:0035909	aorta morphogenesis	IEA	AHRD
BP	GO:0036003	positive regulation of transcription from RNA polymerase II promoter in response to stress	None	Extended
BP	GO:0036091	positive regulation of transcription from RNA polymerase II promoter in response to oxidative stress	IEA	AHRD
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0036121	double-stranded DNA helicase activity	IEA	AHRD
BP	GO:0036302	atrioventricular canal development	IEA	AHRD
BP	GO:0040008	regulation of growth	None	Extended
BP	GO:0040014	regulation of multicellular organism growth	None	Extended
BP	GO:0040018	positive regulation of multicellular organism growth	IEA	AHRD
BP	GO:0042048	olfactory behavior	IEA	AHRD
BP	GO:0042110	T cell activation	None	Extended
BP	GO:0042127	regulation of cell population proliferation	None	Extended
MF	GO:0042393	histone binding	None	Extended
BP	GO:0042981	regulation of apoptotic process	None	Extended
BP	GO:0043009	chordate embryonic development	None	Extended
BP	GO:0043066	negative regulation of apoptotic process	None	Extended
BP	GO:0043067	regulation of programmed cell death	None	Extended
BP	GO:0043069	negative regulation of programmed cell death	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043269	regulation of ion transport	None	Extended
MF	GO:0043565	sequence-specific DNA binding	None	Extended
BP	GO:0043584	nose development	IEA	AHRD
BP	GO:0043618	regulation of transcription from RNA polymerase II promoter in response to stress	None	Extended
BP	GO:0043619	regulation of transcription from RNA polymerase II promoter in response to oxidative stress	None	Extended
BP	GO:0043620	regulation of DNA-templated transcription in response to stress	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
CC	GO:0044665	MLL1/2 complex	None	Extended
BP	GO:0045321	leukocyte activation	None	Extended
BP	GO:0045595	regulation of cell differentiation	None	Extended
BP	GO:0045892	negative regulation of DNA-templated transcription	None	Extended
BP	GO:0045893	positive regulation of DNA-templated transcription	None	Extended
BP	GO:0045927	positive regulation of growth	None	Extended
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0045944	positive regulation of transcription by RNA polymerase II	None	Extended
BP	GO:0045945	positive regulation of transcription by RNA polymerase III	IEA	AHRD
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046649	lymphocyte activation	None	Extended
BP	GO:0046883	regulation of hormone secretion	None	Extended
BP	GO:0048468	cell development	None	Extended
BP	GO:0048477	oogenesis	IEA	AHRD
BP	GO:0048484	enteric nervous system development	IEA	AHRD
BP	GO:0048513	animal organ development	None	Extended
BP	GO:0048514	blood vessel morphogenesis	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048565	digestive tract development	IEA	AHRD
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048585	negative regulation of response to stimulus	None	Extended
BP	GO:0048598	embryonic morphogenesis	None	Extended
BP	GO:0048608	reproductive structure development	None	Extended
BP	GO:0048609	multicellular organismal reproductive process	None	Extended
BP	GO:0048638	regulation of developmental growth	None	Extended
BP	GO:0048639	positive regulation of developmental growth	None	Extended
BP	GO:0048729	tissue morphogenesis	None	Extended
BP	GO:0048731	system development	None	Extended
BP	GO:0048752	semicircular canal morphogenesis	IEA	AHRD
BP	GO:0048771	tissue remodeling	None	Extended
BP	GO:0048806	genitalia development	None	Extended
BP	GO:0048844	artery morphogenesis	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050767	regulation of neurogenesis	IEA	AHRD
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050877	nervous system process	None	Extended
BP	GO:0050890	cognition	IEA	AHRD
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0050954	sensory perception of mechanical stimulus	None	Extended
BP	GO:0051046	regulation of secretion	None	Extended
BP	GO:0051049	regulation of transport	None	Extended
BP	GO:0051094	positive regulation of developmental process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051240	positive regulation of multicellular organismal process	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051248	negative regulation of protein metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051253	negative regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0051279	regulation of release of sequestered calcium ion into cytosol	None	Extended
BP	GO:0051282	regulation of sequestering of calcium ion	None	Extended
BP	GO:0051703	biological process involved in intraspecies interaction between organisms	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0051924	regulation of calcium ion transport	None	Extended
BP	GO:0051960	regulation of nervous system development	None	Extended
BP	GO:0055008	cardiac muscle tissue morphogenesis	None	Extended
BP	GO:0055010	ventricular cardiac muscle tissue morphogenesis	None	Extended
BP	GO:0060021	roof of mouth development	None	Extended
BP	GO:0060041	retina development in camera-type eye	IEA	AHRD
BP	GO:0060123	regulation of growth hormone secretion	IEA	AHRD
BP	GO:0060134	prepulse inhibition	IEA	AHRD
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0060284	regulation of cell development	None	Extended
BP	GO:0060303	obsolete regulation of nucleosome density	IEA	AHRD
BP	GO:0060324	face development	IEA	AHRD
BP	GO:0060384	innervation	IEA	AHRD
BP	GO:0060411	cardiac septum morphogenesis	IEA	AHRD
BP	GO:0060415	muscle tissue morphogenesis	None	Extended
BP	GO:0060548	negative regulation of cell death	None	Extended
BP	GO:0060828	regulation of canonical Wnt signaling pathway	None	Extended
BP	GO:0061383	trabecula morphogenesis	None	Extended
BP	GO:0061384	heart trabecula morphogenesis	None	Extended
BP	GO:0062009	secondary palate development	IEA	AHRD
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
MF	GO:0070016	armadillo repeat domain binding	IEA	AHRD
CC	GO:0071339	MLL1 complex	IEA	AHRD
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090087	regulation of peptide transport	None	Extended
BP	GO:0090090	negative regulation of canonical Wnt signaling pathway	IEA	AHRD
BP	GO:0090276	regulation of peptide hormone secretion	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090659	walking behavior	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0098687	chromosomal region	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140030	modification-dependent protein binding	None	Extended
MF	GO:0140034	methylation-dependent protein binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901522	positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901983	regulation of protein acetylation	None	Extended
BP	GO:1901984	negative regulation of protein acetylation	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
BP	GO:1902679	negative regulation of RNA biosynthetic process	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903131	mononuclear cell differentiation	None	Extended
BP	GO:1903169	regulation of calcium ion transmembrane transport	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903507	negative regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903530	regulation of secretion by cell	None	Extended
BP	GO:1904062	regulation of cation transmembrane transport	None	Extended
CC	GO:1990234	transferase complex	None	Extended
MF	GO:1990837	sequence-specific double-stranded DNA binding	None	Extended
MF	GO:1990841	promoter-specific chromatin binding	IEA	AHRD
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000177	regulation of neural precursor cell proliferation	None	Extended
BP	GO:2000178	negative regulation of neural precursor cell proliferation	IEA	AHRD
BP	GO:2000269	regulation of fibroblast apoptotic process	None	Extended
BP	GO:2000270	negative regulation of fibroblast apoptotic process	IEA	AHRD
BP	GO:2000756	regulation of peptidyl-lysine acetylation	None	Extended
BP	GO:2000757	negative regulation of peptidyl-lysine acetylation	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR027417	P-loop_NTPase	7	78

External Links

No external refs found!

SOLTUB.AGRIA.G00000002035

Expression Profile

Co-expression Networks

Functional Annotation