SOLTUB.AGRIA.G00000019552


Description : transcription factor


Gene families : OG_02_0014949 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000019552
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_61


Type GO Term Name Evidence Source
MF GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA AHRD
MF GO:0001139 RNA polymerase II complex recruiting activity IEA AHRD
BP GO:0001193 maintenance of transcriptional fidelity during transcription elongation by RNA polymerase II IEA AHRD
MF GO:0003711 transcription elongation factor activity IEA AHRD
CC GO:0005654 nucleoplasm IEA AHRD
CC GO:0005813 centrosome IEA AHRD
BP GO:0006362 transcription elongation by RNA polymerase I IEA AHRD
BP GO:0009739 response to gibberellin IEA AHRD
BP GO:0009845 seed germination IEA AHRD
BP GO:0009910 negative regulation of flower development IEA AHRD
BP GO:0010162 seed dormancy process IEA AHRD
BP GO:0030218 erythrocyte differentiation IEA AHRD
BP GO:0031440 regulation of mRNA 3'-end processing IEA AHRD
BP GO:0031564 transcription antitermination IEA AHRD
BP GO:0032968 positive regulation of transcription elongation by RNA polymerase II IEA AHRD
BP GO:0042797 tRNA transcription by RNA polymerase III IEA AHRD
BP GO:0045899 positive regulation of RNA polymerase II transcription preinitiation complex assembly IEA AHRD
BP GO:1901919 positive regulation of exoribonuclease activity IEA AHRD
Type GO Term Name Evidence Source
BP GO:0000724 double-strand break repair via homologous recombination IEP Predict GO terms from Neighborhoods
BP GO:0000725 recombinational repair IEP Predict GO terms from Neighborhoods
MF GO:0002020 protease binding IEP Predict GO terms from Neighborhoods
BP GO:0002943 tRNA dihydrouridine synthesis IEP Predict GO terms from Neighborhoods
CC GO:0005737 cytoplasm IEP Predict GO terms from Neighborhoods
BP GO:0006302 double-strand break repair IEP Predict GO terms from Neighborhoods
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Predict GO terms from Neighborhoods
BP GO:0006400 tRNA modification IEP Predict GO terms from Neighborhoods
BP GO:0006915 apoptotic process IEP Predict GO terms from Neighborhoods
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Predict GO terms from Neighborhoods
BP GO:0040017 positive regulation of locomotion IEP Predict GO terms from Neighborhoods
BP GO:0043009 chordate embryonic development IEP Predict GO terms from Neighborhoods
BP GO:0045003 double-strand break repair via synthesis-dependent strand annealing IEP Predict GO terms from Neighborhoods
BP GO:0051865 protein autoubiquitination IEP Predict GO terms from Neighborhoods
BP GO:0070534 protein K63-linked ubiquitination IEP Predict GO terms from Neighborhoods
BP GO:0070936 protein K48-linked ubiquitination IEP Predict GO terms from Neighborhoods
MF GO:0089720 caspase binding IEP Predict GO terms from Neighborhoods
MF GO:0106413 dihydrouridine synthase activity IEP Predict GO terms from Neighborhoods
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP Predict GO terms from Neighborhoods
BP GO:1900101 regulation of endoplasmic reticulum unfolded protein response IEP Predict GO terms from Neighborhoods
BP GO:1900102 negative regulation of endoplasmic reticulum unfolded protein response IEP Predict GO terms from Neighborhoods
BP GO:1903573 negative regulation of response to endoplasmic reticulum stress IEP Predict GO terms from Neighborhoods
BP GO:1903894 regulation of IRE1-mediated unfolded protein response IEP Predict GO terms from Neighborhoods
BP GO:1903895 negative regulation of IRE1-mediated unfolded protein response IEP Predict GO terms from Neighborhoods
BP GO:1905897 regulation of response to endoplasmic reticulum stress IEP Predict GO terms from Neighborhoods
BP GO:2000147 positive regulation of cell motility IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR003618 TFIIS_cen_dom 191 307
IPR035441 TFIIS/LEDGF_dom_sf 27 97
IPR017923 TFIIS_N 37 86
IPR001222 Znf_TFIIS 321 359
IPR036575 TFIIS_cen_dom_sf 182 292
IPR006289 TFSII 13 361
No external refs found!