SOLTUB.AGRIA.G00000019744

Description : YELLOW STRIPE like 3

Gene families : OG_02_0000205 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000019744
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_189

Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005774	vacuolar membrane	None	Extended
CC	GO:0005886	plasma membrane	IEA	AHRD
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	ion transport	None	Extended
BP	GO:0006812	cation transport	None	Extended
BP	GO:0006826	iron ion transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
CC	GO:0009526	plastid envelope	IEA	AHRD
CC	GO:0009705	plant-type vacuole membrane	IEA	AHRD
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010038	response to metal ion	None	Extended
BP	GO:0010039	response to iron ion	IEA	AHRD
BP	GO:0010043	response to zinc ion	IEA	AHRD
MF	GO:0015603	iron chelate transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0022414	reproductive process	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
BP	GO:0030001	metal ion transport	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0031967	organelle envelope	None	Extended
CC	GO:0031975	envelope	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0034220	ion transmembrane transport	None	Extended
BP	GO:0034755	iron ion transmembrane transport	IEA	AHRD
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0048316	seed development	IEA	AHRD
BP	GO:0048608	reproductive structure development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
MF	GO:0051980	iron-nicotianamine transmembrane transporter activity	IEA	AHRD
BP	GO:0055085	transmembrane transport	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
BP	GO:0098655	cation transmembrane transport	None	Extended
BP	GO:0098660	inorganic ion transmembrane transport	None	Extended
BP	GO:0098662	inorganic cation transmembrane transport	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0001891	phagocytic cup	IEP	Predict GO terms from Neighborhoods
MF	GO:0005337	nucleoside transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005345	purine nucleobase transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005548	phospholipid transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0006305	DNA alkylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006306	DNA methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006644	phospholipid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006863	purine nucleobase transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0007613	memory	IEP	Predict GO terms from Neighborhoods
BP	GO:0007632	visual behavior	IEP	Predict GO terms from Neighborhoods
BP	GO:0008306	associative learning	IEP	Predict GO terms from Neighborhoods
MF	GO:0008525	phosphatidylcholine transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0008542	visual learning	IEP	Predict GO terms from Neighborhoods
BP	GO:0010023	proanthocyanidin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010112	regulation of systemic acquired resistance	IEP	Predict GO terms from Neighborhoods
BP	GO:0010184	cytokinin transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0010249	auxin conjugate metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0010279	indole-3-acetic acid amido synthetase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010559	regulation of glycoprotein biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010561	negative regulation of glycoprotein biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010874	regulation of cholesterol efflux	IEP	Predict GO terms from Neighborhoods
BP	GO:0010875	positive regulation of cholesterol efflux	IEP	Predict GO terms from Neighborhoods
MF	GO:0015205	nucleobase transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015211	purine nucleoside transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0015851	nucleobase transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0016046	detection of fungus	IEP	Predict GO terms from Neighborhoods
MF	GO:0016208	AMP binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0016881	acid-amino acid ligase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0018149	peptide cross-linking	IEP	Predict GO terms from Neighborhoods
BP	GO:0018874	benzoate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0030216	keratinocyte differentiation	IEP	Predict GO terms from Neighborhoods
MF	GO:0030226	apolipoprotein receptor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0030324	lung development	IEP	Predict GO terms from Neighborhoods
CC	GO:0031253	cell projection membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031256	leading edge membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0031579	membrane raft organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0032368	regulation of lipid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0032370	positive regulation of lipid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0032371	regulation of sterol transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0032373	positive regulation of sterol transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0032374	regulation of cholesterol transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0032376	positive regulation of cholesterol transport	IEP	Predict GO terms from Neighborhoods
CC	GO:0032587	ruffle membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0034052	positive regulation of plant-type hypersensitive response	IEP	Predict GO terms from Neighborhoods
MF	GO:0034188	apolipoprotein A-I receptor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0038024	cargo receptor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0038027	apolipoprotein A-I-mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
CC	GO:0042599	lamellar body	IEP	Predict GO terms from Neighborhoods
BP	GO:0042984	regulation of amyloid precursor protein biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042985	negative regulation of amyloid precursor protein biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044857	plasma membrane raft organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0045806	negative regulation of endocytosis	IEP	Predict GO terms from Neighborhoods
BP	GO:0048871	multicellular organismal homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0050764	regulation of phagocytosis	IEP	Predict GO terms from Neighborhoods
BP	GO:0050766	positive regulation of phagocytosis	IEP	Predict GO terms from Neighborhoods
BP	GO:0051176	positive regulation of sulfur metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0052318	regulation of phytoalexin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0052319	regulation of phytoalexin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0052320	positive regulation of phytoalexin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0052322	positive regulation of phytoalexin biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0052625	4-aminobenzoate amino acid synthetase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0052626	benzoate amino acid synthetase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0052627	vanillate amino acid synthetase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0052628	4-hydroxybenzoate amino acid synthetase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0060099	regulation of phagocytosis, engulfment	IEP	Predict GO terms from Neighborhoods
BP	GO:0060100	positive regulation of phagocytosis, engulfment	IEP	Predict GO terms from Neighborhoods
BP	GO:0060147	regulation of post-transcriptional gene silencing	IEP	Predict GO terms from Neighborhoods
BP	GO:0060148	positive regulation of post-transcriptional gene silencing	IEP	Predict GO terms from Neighborhoods
BP	GO:0060966	regulation of gene silencing by RNA	IEP	Predict GO terms from Neighborhoods
BP	GO:0070372	regulation of ERK1 and ERK2 cascade	IEP	Predict GO terms from Neighborhoods
BP	GO:0070374	positive regulation of ERK1 and ERK2 cascade	IEP	Predict GO terms from Neighborhoods
MF	GO:0070406	glutamine binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0097208	alveolar lamellar body	IEP	Predict GO terms from Neighborhoods
CC	GO:0097232	lamellar body membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0097242	amyloid-beta clearance	IEP	Predict GO terms from Neighborhoods
CC	GO:0097386	glial cell projection	IEP	Predict GO terms from Neighborhoods
BP	GO:0098543	detection of other organism	IEP	Predict GO terms from Neighborhoods
MF	GO:0102053	(-)-jasmonoyl-isoleucine synthetase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0102057	jasmonoyl-valine synthetase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0102058	jasmonoyl-leucine synthetase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0140303	intramembrane lipid transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0140326	ATPase-coupled intramembrane lipid transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0140328	floppase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0150094	amyloid-beta clearance by cellular catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1900101	regulation of endoplasmic reticulum unfolded protein response	IEP	Predict GO terms from Neighborhoods
BP	GO:1900102	negative regulation of endoplasmic reticulum unfolded protein response	IEP	Predict GO terms from Neighborhoods
BP	GO:1900221	regulation of amyloid-beta clearance	IEP	Predict GO terms from Neighborhoods
BP	GO:1900223	positive regulation of amyloid-beta clearance	IEP	Predict GO terms from Neighborhoods
BP	GO:1900368	regulation of post-transcriptional gene silencing by RNA	IEP	Predict GO terms from Neighborhoods
BP	GO:1900370	positive regulation of post-transcriptional gene silencing by RNA	IEP	Predict GO terms from Neighborhoods
BP	GO:1901074	regulation of engulfment of apoptotic cell	IEP	Predict GO terms from Neighborhoods
BP	GO:1901076	positive regulation of engulfment of apoptotic cell	IEP	Predict GO terms from Neighborhoods
BP	GO:1901182	regulation of camalexin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901183	positive regulation of camalexin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902003	regulation of amyloid-beta formation	IEP	Predict GO terms from Neighborhoods
BP	GO:1902430	negative regulation of amyloid-beta formation	IEP	Predict GO terms from Neighborhoods
BP	GO:1902991	regulation of amyloid precursor protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902992	negative regulation of amyloid precursor protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902994	regulation of phospholipid efflux	IEP	Predict GO terms from Neighborhoods
BP	GO:1902995	positive regulation of phospholipid efflux	IEP	Predict GO terms from Neighborhoods
BP	GO:1903018	regulation of glycoprotein metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903019	negative regulation of glycoprotein metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903573	negative regulation of response to endoplasmic reticulum stress	IEP	Predict GO terms from Neighborhoods
BP	GO:1903897	regulation of PERK-mediated unfolded protein response	IEP	Predict GO terms from Neighborhoods
BP	GO:1903898	negative regulation of PERK-mediated unfolded protein response	IEP	Predict GO terms from Neighborhoods
BP	GO:1905153	regulation of membrane invagination	IEP	Predict GO terms from Neighborhoods
BP	GO:1905155	positive regulation of membrane invagination	IEP	Predict GO terms from Neighborhoods
BP	GO:1905897	regulation of response to endoplasmic reticulum stress	IEP	Predict GO terms from Neighborhoods
BP	GO:1905954	positive regulation of lipid localization	IEP	Predict GO terms from Neighborhoods
BP	GO:2000008	regulation of protein localization to cell surface	IEP	Predict GO terms from Neighborhoods
BP	GO:2000010	positive regulation of protein localization to cell surface	IEP	Predict GO terms from Neighborhoods
BP	GO:2000425	regulation of apoptotic cell clearance	IEP	Predict GO terms from Neighborhoods
BP	GO:2000427	positive regulation of apoptotic cell clearance	IEP	Predict GO terms from Neighborhoods
BP	GO:2001138	regulation of phospholipid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:2001140	positive regulation of phospholipid transport	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR004813	OPT	38	650
IPR004813	OPT	34	651

External Links

No external refs found!

SOLTUB.AGRIA.G00000019744

Expression Profile

Co-expression Networks

Functional Annotation