Description : DNA-directed RNA polymerase
Gene families : OG_02_0009284 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000019880 | |
| Cluster | HCCA Clusters (HRR 50 & PCC 0.5): Cluster_221 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000028 | ribosomal small subunit assembly | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000154 | rRNA modification | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000278 | mitotic cell cycle | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0000315 | organellar large ribosomal subunit | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0000428 | DNA-directed RNA polymerase complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000462 | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000469 | cleavage involved in rRNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000478 | endonucleolytic cleavage involved in rRNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000479 | endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000741 | karyogamy | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0001054 | RNA polymerase I activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0001056 | RNA polymerase III activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0001091 | RNA polymerase II general transcription initiation factor binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0001093 | TFIIB-class transcription factor binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0001098 | basal transcription machinery binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0001099 | basal RNA polymerase II transcription machinery binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0001510 | RNA methylation | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0001650 | fibrillar center | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0001837 | epithelial to mesenchymal transition | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0002103 | endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0003723 | RNA binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0004407 | histone deacetylase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0005048 | signal sequence binding | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005654 | nucleoplasm | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005666 | RNA polymerase III complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005730 | nucleolus | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005732 | sno(s)RNA-containing ribonucleoprotein complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005736 | RNA polymerase I complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005739 | mitochondrion | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005762 | mitochondrial large ribosomal subunit | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006360 | transcription by RNA polymerase I | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006364 | rRNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006383 | transcription by RNA polymerase III | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006396 | RNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006996 | organelle organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006997 | nucleus organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0007000 | nucleolus organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0007005 | mitochondrion organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0007006 | mitochondrial membrane organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0007349 | cellularization | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0008139 | nuclear localization sequence binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0008173 | RNA methyltransferase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0008649 | rRNA methyltransferase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009292 | horizontal gene transfer | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009294 | DNA-mediated transformation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009304 | tRNA transcription | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009413 | response to flooding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009451 | RNA modification | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009555 | pollen development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009561 | megagametogenesis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009567 | double fertilization forming a zygote and endosperm | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009657 | plastid organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009668 | plastid membrane organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009686 | gibberellin biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009944 | polarity specification of adaxial/abaxial axis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009960 | endosperm development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009987 | cellular process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010027 | thylakoid membrane organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010162 | seed dormancy process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010197 | polar nucleus fusion | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010342 | endosperm cellularization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010468 | regulation of gene expression | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010581 | regulation of starch biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010941 | regulation of cell death | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010962 | regulation of glucan biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0014029 | neural crest formation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0014032 | neural crest cell development | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0015030 | Cajal body | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0015074 | DNA integration | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016043 | cellular component organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016070 | RNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016072 | rRNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016074 | sno(s)RNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0016435 | rRNA (guanine) methyltransferase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0016811 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0019213 | deacetylase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0019336 | phenol-containing compound catabolic process | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0019843 | rRNA binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0030490 | maturation of SSU-rRNA | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0030515 | snoRNA binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0030519 | snoRNP binding | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0030532 | small nuclear ribonucleoprotein complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0030880 | RNA polymerase complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031167 | rRNA methylation | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0031428 | box C/D RNP complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0031429 | box H/ACA snoRNP complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0032040 | small-subunit processome | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032196 | transposition | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032501 | multicellular organismal process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032502 | developmental process | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0033558 | protein lysine deacetylase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0033979 | box H/ACA RNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0034470 | ncRNA processing | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0034512 | box C/D RNA binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0034513 | box H/ACA snoRNA binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0036265 | RNA (guanine-N7)-methylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0042254 | ribosome biogenesis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0042306 | regulation of protein import into nucleus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0042797 | tRNA transcription by RNA polymerase III | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0043021 | ribonucleoprotein complex binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0043022 | ribosome binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0043024 | ribosomal small subunit binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043067 | regulation of programmed cell death | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0045544 | gibberellin 20-oxidase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0046244 | salicylic acid catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0046982 | protein heterodimerization activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0046983 | protein dimerization activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048762 | mesenchymal cell differentiation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048856 | anatomical structure development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048864 | stem cell development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048868 | pollen tube development | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0050897 | cobalt ion binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051647 | nucleus localization | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0055029 | nuclear DNA-directed RNA polymerase complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0061024 | membrane organization | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0062064 | box C/D snoRNP complex binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0062065 | box H/ACA snoRNP complex binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0070475 | rRNA base methylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0070476 | rRNA (guanine-N7)-methylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0070893 | transposon integration | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0072588 | box H/ACA RNP complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0090305 | nucleic acid phosphodiester bond hydrolysis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0090501 | RNA phosphodiester bond hydrolysis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0090502 | RNA phosphodiester bond hydrolysis, endonucleolytic | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0097177 | mitochondrial ribosome binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0097747 | RNA polymerase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0098781 | ncRNA transcription | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0120114 | Sm-like protein family complex | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0140102 | catalytic activity, acting on a rRNA | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0140296 | general transcription initiation factor binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1900180 | regulation of protein localization to nucleus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:2000112 | regulation of cellular macromolecule biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:2000232 | regulation of rRNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:2000234 | positive regulation of rRNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:2000904 | regulation of starch metabolic process | IEP | Predict GO terms from Neighborhoods |
No InterPro domains available for this sequence
| No external refs found! |