SOLTUB.AGRIA.G00000002097

Description : SNF2 domain-containing protein / helicase domain-containing protein

Gene families : OG_02_0025134 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000002097
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_3

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEA	AHRD
CC	GO:0000419	RNA polymerase V complex	IEA	AHRD
CC	GO:0000428	DNA-directed RNA polymerase complex	None	Extended
BP	GO:0000722	telomere maintenance via recombination	IEA	AHRD
BP	GO:0000723	telomere maintenance	None	Extended
BP	GO:0000724	double-strand break repair via homologous recombination	None	Extended
BP	GO:0000725	recombinational repair	None	Extended
BP	GO:0000731	DNA synthesis involved in DNA repair	None	Extended
CC	GO:0000785	chromatin	None	Extended
CC	GO:0000792	heterochromatin	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	AHRD
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005667	transcription regulator complex	None	Extended
CC	GO:0005721	pericentric heterochromatin	IEA	AHRD
CC	GO:0005730	nucleolus	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006302	double-strand break repair	None	Extended
BP	GO:0006304	DNA modification	None	Extended
BP	GO:0006305	DNA alkylation	None	Extended
BP	GO:0006306	DNA methylation	None	Extended
BP	GO:0006310	DNA recombination	None	Extended
BP	GO:0006311	meiotic gene conversion	IEA	AHRD
BP	GO:0006312	mitotic recombination	None	Extended
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006338	chromatin remodeling	IEA	AHRD
BP	GO:0006346	DNA methylation-dependent heterochromatin formation	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007131	reciprocal meiotic recombination	IEA	AHRD
BP	GO:0007276	gamete generation	None	Extended
BP	GO:0007281	germ cell development	None	Extended
BP	GO:0007292	female gamete generation	None	Extended
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008340	determination of adult lifespan	IEA	AHRD
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009620	response to fungus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010038	response to metal ion	None	Extended
BP	GO:0010212	response to ionizing radiation	None	Extended
BP	GO:0010332	response to gamma radiation	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0014070	response to organic cyclic compound	None	Extended
MF	GO:0015616	DNA translocase activity	IEA	AHRD
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	IEA	AHRD
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022412	cellular process involved in reproduction in multicellular organism	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0030491	heteroduplex formation	IEA	AHRD
CC	GO:0030880	RNA polymerase complex	None	Extended
BP	GO:0031047	gene silencing by RNA	None	Extended
BP	GO:0031048	small non-coding RNA-dependent heterochromatin formation	None	Extended
BP	GO:0031056	regulation of histone modification	None	Extended
BP	GO:0031058	positive regulation of histone modification	None	Extended
BP	GO:0031060	regulation of histone methylation	None	Extended
BP	GO:0031062	positive regulation of histone methylation	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031399	regulation of protein modification process	None	Extended
BP	GO:0031401	positive regulation of protein modification process	None	Extended
BP	GO:0031507	heterochromatin formation	None	Extended
BP	GO:0032069	regulation of nuclease activity	None	Extended
BP	GO:0032070	regulation of deoxyribonuclease activity	None	Extended
BP	GO:0032071	regulation of endodeoxyribonuclease activity	None	Extended
BP	GO:0032075	positive regulation of nuclease activity	None	Extended
BP	GO:0032077	positive regulation of deoxyribonuclease activity	None	Extended
BP	GO:0032079	positive regulation of endodeoxyribonuclease activity	IEA	AHRD
BP	GO:0032200	telomere organization	None	Extended
BP	GO:0032259	methylation	None	Extended
BP	GO:0032392	DNA geometric change	IEA	AHRD
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032776	DNA methylation on cytosine	IEA	AHRD
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0035561	regulation of chromatin binding	None	Extended
BP	GO:0035563	positive regulation of chromatin binding	IEA	AHRD
BP	GO:0035822	gene conversion	None	Extended
BP	GO:0035825	homologous recombination	None	Extended
CC	GO:0035861	site of double-strand break	IEA	AHRD
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0040029	epigenetic regulation of gene expression	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0043085	positive regulation of catalytic activity	None	Extended
BP	GO:0043150	DNA synthesis involved in double-strand break repair via homologous recombination	IEA	AHRD
MF	GO:0043167	ion binding	IEA	AHRD
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043330	response to exogenous dsRNA	None	Extended
BP	GO:0043331	response to dsRNA	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044093	positive regulation of molecular function	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044403	biological process involved in symbiotic interaction	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0044728	DNA methylation or demethylation	None	Extended
BP	GO:0045003	double-strand break repair via synthesis-dependent strand annealing	IEA	AHRD
BP	GO:0045814	negative regulation of gene expression, epigenetic	None	Extended
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048468	cell development	None	Extended
BP	GO:0048477	oogenesis	IEA	AHRD
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048609	multicellular organismal reproductive process	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050790	regulation of catalytic activity	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050832	defense response to fungus	IEA	AHRD
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051052	regulation of DNA metabolic process	None	Extended
BP	GO:0051054	positive regulation of DNA metabolic process	None	Extended
BP	GO:0051098	regulation of binding	None	Extended
BP	GO:0051099	positive regulation of binding	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051247	positive regulation of protein metabolic process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0051336	regulation of hydrolase activity	None	Extended
BP	GO:0051345	positive regulation of hydrolase activity	None	Extended
BP	GO:0051570	regulation of histone H3-K9 methylation	None	Extended
BP	GO:0051574	positive regulation of histone H3-K9 methylation	None	Extended
BP	GO:0051701	biological process involved in interaction with host	IEA	AHRD
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
CC	GO:0055029	nuclear DNA-directed RNA polymerase complex	None	Extended
BP	GO:0060147	regulation of post-transcriptional gene silencing	None	Extended
BP	GO:0060148	positive regulation of post-transcriptional gene silencing	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0060964	regulation of miRNA-mediated gene silencing	IEA	AHRD
BP	GO:0060966	regulation of gene silencing by RNA	None	Extended
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	None	Extended
BP	GO:0061982	meiosis I cell cycle process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065009	regulation of molecular function	None	Extended
BP	GO:0070828	heterochromatin organization	None	Extended
BP	GO:0070829	obsolete heterochromatin maintenance	IEA	AHRD
BP	GO:0070887	cellular response to chemical stimulus	None	Extended
BP	GO:0071103	DNA conformation change	None	Extended
BP	GO:0071214	cellular response to abiotic stimulus	None	Extended
BP	GO:0071241	cellular response to inorganic substance	None	Extended
BP	GO:0071248	cellular response to metal ion	IEA	AHRD
BP	GO:0071310	cellular response to organic substance	None	Extended
BP	GO:0071359	cellular response to dsRNA	None	Extended
BP	GO:0071360	cellular response to exogenous dsRNA	IEA	AHRD
BP	GO:0071407	cellular response to organic cyclic compound	None	Extended
BP	GO:0071478	cellular response to radiation	None	Extended
BP	GO:0071479	cellular response to ionizing radiation	None	Extended
BP	GO:0071480	cellular response to gamma radiation	IEA	AHRD
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0071897	DNA biosynthetic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0080188	gene silencing by RNA-directed DNA methylation	IEA	AHRD
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0090577	RNA polymerase IV transcription regulator complex	IEA	AHRD
CC	GO:0090734	site of DNA damage	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
BP	GO:0104004	cellular response to environmental stimulus	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:0140527	reciprocal homologous recombination	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
BP	GO:0140718	facultative heterochromatin formation	None	Extended
BP	GO:1900109	regulation of histone H3-K9 dimethylation	None	Extended
BP	GO:1900111	positive regulation of histone H3-K9 dimethylation	IEA	AHRD
BP	GO:1900368	regulation of post-transcriptional gene silencing by RNA	None	Extended
BP	GO:1900370	positive regulation of post-transcriptional gene silencing by RNA	IEA	AHRD
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901698	response to nitrogen compound	None	Extended
BP	GO:1901699	cellular response to nitrogen compound	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
BP	GO:1903046	meiotic cell cycle process	None	Extended
CC	GO:1990234	transferase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0009635	response to herbicide	IEP	Predict GO terms from Neighborhoods
MF	GO:0080019	fatty-acyl-CoA reductase (alcohol-forming) activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1903173	fatty alcohol metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903175	fatty alcohol biosynthetic process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR027417	P-loop_NTPase	1	115

External Links

No external refs found!

SOLTUB.AGRIA.G00000002097

Expression Profile

Co-expression Networks

Functional Annotation