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  5. SOLTUB.AGRIA.G00000020793

SOLTUB.AGRIA.G00000020793


Description : Elongation factor 1-alpha


Gene families : OG_02_0000129 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000020793
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_37

Target Alias Description ECC score Gene Family Method Actions
SOLTUB.AGRIA.G00000020781 No alias Elongation factor 1-alpha 0.09 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000020781 No alias Elongation factor 1-alpha 0.09 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000020781 No alias Elongation factor 1-alpha 0.09 Orthogroups with 8 Potato genotypes

Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEA AHRD
MF GO:0003746 translation elongation factor activity IEA AHRD
MF GO:0003924 GTPase activity IEA AHRD
MF GO:0005516 calmodulin binding IEA AHRD
MF GO:0005525 GTP binding IEA AHRD
CC GO:0005730 nucleolus IEA AHRD
CC GO:0005739 mitochondrion IEA AHRD
CC GO:0005774 vacuolar membrane IEA AHRD
CC GO:0005829 cytosol IEA AHRD
CC GO:0005886 plasma membrane IEA AHRD
BP GO:0006414 translational elongation IEA AHRD
BP GO:0007017 microtubule-based process IEA AHRD
CC GO:0009506 plasmodesma IEA AHRD
BP GO:0019722 calcium-mediated signaling IEA AHRD
CC GO:0048471 perinuclear region of cytoplasm IEA AHRD
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Type GO Term Name Evidence Source
BP GO:0002183 cytoplasmic translational initiation IEP Predict GO terms from Neighborhoods
MF GO:0003724 RNA helicase activity IEP Predict GO terms from Neighborhoods
MF GO:0003743 translation initiation factor activity IEP Predict GO terms from Neighborhoods
MF GO:0004386 helicase activity IEP Predict GO terms from Neighborhoods
MF GO:0005200 structural constituent of cytoskeleton IEP Predict GO terms from Neighborhoods
MF GO:0005524 ATP binding IEP Predict GO terms from Neighborhoods
CC GO:0005681 spliceosomal complex IEP Predict GO terms from Neighborhoods
BP GO:0006413 translational initiation IEP Predict GO terms from Neighborhoods
MF GO:0008186 ATP-dependent activity, acting on RNA IEP Predict GO terms from Neighborhoods
BP GO:0009845 seed germination IEP Predict GO terms from Neighborhoods
BP GO:0010053 root epidermal cell differentiation IEP Predict GO terms from Neighborhoods
MF GO:0030554 adenyl nucleotide binding IEP Predict GO terms from Neighborhoods
MF GO:0032559 adenyl ribonucleotide binding IEP Predict GO terms from Neighborhoods
BP GO:0034097 response to cytokine IEP Predict GO terms from Neighborhoods
BP GO:0051348 negative regulation of transferase activity IEP Predict GO terms from Neighborhoods
CC GO:0071013 catalytic step 2 spliceosome IEP Predict GO terms from Neighborhoods
BP GO:0071345 cellular response to cytokine stimulus IEP Predict GO terms from Neighborhoods
BP GO:0090627 plant epidermal cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:1900259 regulation of RNA-directed 5'-3' RNA polymerase activity IEP Predict GO terms from Neighborhoods
BP GO:1900260 negative regulation of RNA-directed 5'-3' RNA polymerase activity IEP Predict GO terms from Neighborhoods
BP GO:1990823 response to leukemia inhibitory factor IEP Predict GO terms from Neighborhoods
BP GO:1990830 cellular response to leukemia inhibitory factor IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR004160 Transl_elong_EFTu/EF1A_C 322 429
IPR004161 EFTu-like_2 248 313
IPR000795 T_Tr_GTP-bd_dom 7 222
IPR004539 Transl_elong_EF1A_euk/arc 1 433
IPR027417 P-loop_NTPase 3 249
IPR009001 Transl_elong_EF1A/Init_IF2_C 326 430
IPR009000 Transl_B-barrel_sf 231 321
No external refs found!