Description : RNA-binding (RRM/RBD/RNP motifs) family protein
Gene families : OG_02_0025965 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000020955 | |
| Cluster | HCCA Clusters (HRR 50 & PCC 0.5): Cluster_171 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000028 | ribosomal small subunit assembly | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000154 | rRNA modification | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000278 | mitotic cell cycle | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000413 | protein peptidyl-prolyl isomerization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000454 | snoRNA guided rRNA pseudouridine synthesis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000455 | enzyme-directed rRNA pseudouridine synthesis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000462 | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000469 | cleavage involved in rRNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000478 | endonucleolytic cleavage involved in rRNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000479 | endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000495 | box H/ACA RNA 3'-end processing | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0000775 | chromosome, centromeric region | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0000792 | heterochromatin | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000966 | RNA 5'-end processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000967 | rRNA 5'-end processing | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0001091 | RNA polymerase II general transcription initiation factor binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0001093 | TFIIB-class transcription factor binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0001094 | TFIID-class transcription factor complex binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0001098 | basal transcription machinery binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0001099 | basal RNA polymerase II transcription machinery binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0001522 | pseudouridine synthesis | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0001650 | fibrillar center | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0001825 | blastocyst formation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0001837 | epithelial to mesenchymal transition | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0003676 | nucleic acid binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0003720 | telomerase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0003723 | RNA binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0003964 | RNA-directed DNA polymerase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0004730 | pseudouridylate synthase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0005048 | signal sequence binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0005527 | macrolide binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0005528 | FK506 binding | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005657 | replication fork | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005730 | nucleolus | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005732 | sno(s)RNA-containing ribonucleoprotein complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006270 | DNA replication initiation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006271 | DNA strand elongation involved in DNA replication | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006325 | chromatin organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006334 | nucleosome assembly | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006338 | chromatin remodeling | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006364 | rRNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006396 | RNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006403 | RNA localization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0007000 | nucleolus organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0007049 | cell cycle | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0007444 | imaginal disc development | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0008134 | transcription factor binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0008139 | nuclear localization sequence binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0008284 | positive regulation of cell population proliferation | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0008622 | epsilon DNA polymerase complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0008623 | CHRAC | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009892 | negative regulation of metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009895 | negative regulation of catabolic process | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0009982 | pseudouridine synthase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010507 | negative regulation of autophagy | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0014029 | neural crest formation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0014032 | neural crest cell development | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0015030 | Cajal body | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016070 | RNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016072 | rRNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016073 | snRNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016074 | sno(s)RNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016241 | regulation of macroautophagy | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016242 | negative regulation of macroautophagy | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0016604 | nuclear body | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0016853 | isomerase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0016859 | cis-trans isomerase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0016866 | intramolecular transferase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0018208 | peptidyl-proline modification | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0019954 | asexual reproduction | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0022616 | DNA strand elongation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0030010 | establishment of cell polarity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0030337 | DNA polymerase processivity factor activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0030436 | asexual sporulation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0030447 | filamentous growth | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0030490 | maturation of SSU-rRNA | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0030515 | snoRNA binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0030519 | snoRNP binding | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0030532 | small nuclear ribonucleoprotein complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0031010 | ISWI-type complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031118 | rRNA pseudouridine synthesis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031120 | snRNA pseudouridine synthesis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031126 | sno(s)RNA 3'-end processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031329 | regulation of cellular catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031330 | negative regulation of cellular catabolic process | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0031428 | box C/D RNP complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0031429 | box H/ACA snoRNP complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0031981 | nuclear lumen | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0032040 | small-subunit processome | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032204 | regulation of telomere maintenance | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032206 | positive regulation of telomere maintenance | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032210 | regulation of telomere maintenance via telomerase | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032212 | positive regulation of telomere maintenance via telomerase | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0032545 | CURI complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032880 | regulation of protein localization | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0033218 | amide binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0033313 | meiotic cell cycle checkpoint signaling | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0033979 | box H/ACA RNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0034061 | DNA polymerase activity | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0034456 | UTP-C complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0034470 | ncRNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0034471 | ncRNA 5'-end processing | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0034512 | box C/D RNA binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0034513 | box H/ACA snoRNA binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0034964 | box H/ACA RNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0035220 | wing disc development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0035626 | juvenile hormone mediated signaling pathway | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0036260 | RNA capping | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0040020 | regulation of meiotic nuclear division | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0040031 | snRNA modification | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0042254 | ribosome biogenesis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0042306 | regulation of protein import into nucleus | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0042575 | DNA polymerase complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0042766 | obsolete nucleosome mobilization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043144 | sno(s)RNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043489 | RNA stabilization | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0043596 | nuclear replication fork | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043628 | small regulatory ncRNA 3'-end processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043933 | protein-containing complex organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0044085 | cellular component biogenesis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0045835 | negative regulation of meiotic nuclear division | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0046689 | response to mercury ion | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0046982 | protein heterodimerization activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048254 | snoRNA localization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048315 | conidium formation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048468 | cell development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048762 | mesenchymal cell differentiation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048864 | stem cell development | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0051117 | ATPase binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051211 | anisotropic cell growth | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051447 | negative regulation of meiotic cell cycle | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051598 | meiotic recombination checkpoint signaling | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051784 | negative regulation of nuclear division | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051972 | regulation of telomerase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051973 | positive regulation of telomerase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0060341 | regulation of cellular localization | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0062064 | box C/D snoRNP complex binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0062065 | box H/ACA snoRNP complex binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0065003 | protein-containing complex assembly | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0065004 | protein-DNA complex assembly | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0070034 | telomerase RNA binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0070201 | regulation of establishment of protein localization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0070202 | regulation of establishment of protein localization to chromosome | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0070203 | regulation of establishment of protein localization to telomere | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0070594 | juvenile hormone response element binding | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0070603 | SWI/SNF superfamily-type complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0070761 | pre-snoRNP complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0071163 | DNA replication preinitiation complex assembly | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0071824 | protein-DNA complex subunit organization | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0072588 | box H/ACA RNP complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0090305 | nucleic acid phosphodiester bond hydrolysis | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0090661 | box H/ACA telomerase RNP complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0090666 | scaRNA localization to Cajal body | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0090669 | telomerase RNA stabilization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0090670 | RNA localization to Cajal body | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0090685 | RNA localization to nucleus | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0120114 | Sm-like protein family complex | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0140296 | general transcription initiation factor binding | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0140529 | CMG complex assembly | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1900180 | regulation of protein localization to nucleus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1902292 | cell cycle DNA replication initiation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1902296 | DNA strand elongation involved in cell cycle DNA replication | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1902315 | nuclear cell cycle DNA replication initiation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1902319 | DNA strand elongation involved in nuclear cell cycle DNA replication | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1902369 | negative regulation of RNA catabolic process | IEP | Predict GO terms from Neighborhoods |
| CC | GO:1902494 | catalytic complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1902975 | mitotic DNA replication initiation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1902983 | DNA strand elongation involved in mitotic DNA replication | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1904356 | regulation of telomere maintenance via telomere lengthening | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1904358 | positive regulation of telomere maintenance via telomere lengthening | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1904814 | regulation of protein localization to chromosome, telomeric region | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1904816 | positive regulation of protein localization to chromosome, telomeric region | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1904851 | positive regulation of establishment of protein localization to telomere | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1904872 | regulation of telomerase RNA localization to Cajal body | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1904874 | positive regulation of telomerase RNA localization to Cajal body | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1990481 | mRNA pseudouridine synthesis | IEP | Predict GO terms from Neighborhoods |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:2000278 | regulation of DNA biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:2000573 | positive regulation of DNA biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:2001252 | positive regulation of chromosome organization | IEP | Predict GO terms from Neighborhoods |
| No external refs found! |