Description : Transducin/WD40 repeat-like superfamily protein
Gene families : OG_02_0025639 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000002222 | |
| Cluster | HCCA Clusters (HRR 50 & PCC 0.5): Cluster_85 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| SOLTUB.AGRIA.G00000002210 | No alias | Transducin/WD40 repeat-like superfamily protein | 0.09 | Orthogroups with 8 Potato genotypes | |
| SOLTUB.AGRIA.G00000002210 | No alias | Transducin/WD40 repeat-like superfamily protein | 0.09 | Orthogroups with 8 Potato genotypes | |
| SOLTUB.AGRIA.G00000002210 | No alias | Transducin/WD40 repeat-like superfamily protein | 0.09 | Orthogroups with 8 Potato genotypes |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000209 | protein polyubiquitination | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000349 | generation of catalytic spliceosome for first transesterification step | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0000974 | Prp19 complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005681 | spliceosomal complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005684 | U2-type spliceosomal complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006397 | mRNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0008380 | RNA splicing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0022618 | ribonucleoprotein complex assembly | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0043531 | ADP binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0061630 | ubiquitin protein ligase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0061659 | ubiquitin-like protein ligase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0070534 | protein K63-linked ubiquitination | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0071006 | U2-type catalytic step 1 spliceosome | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0071012 | catalytic step 1 spliceosome | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0071013 | catalytic step 2 spliceosome | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0071826 | ribonucleoprotein complex subunit organization | IEP | Predict GO terms from Neighborhoods |
No InterPro domains available for this sequence
| No external refs found! |