SOLTUB.AGRIA.G00000021682

Description : Nuclear-pore anchor protein

Gene families : OG_02_0006182 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000021682
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_51

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005643	nuclear pore	IEA	AHRD
CC	GO:0005730	nucleolus	IEA	AHRD
CC	GO:0005829	cytosol	IEA	AHRD
CC	GO:0005856	cytoskeleton	None	Extended
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006405	RNA export from nucleus	None	Extended
BP	GO:0006406	mRNA export from nucleus	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006913	nucleocytoplasmic transport	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0007346	regulation of mitotic cell cycle	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009408	response to heat	IEA	AHRD
CC	GO:0009506	plasmodesma	IEA	AHRD
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009909	regulation of flower development	None	Extended
BP	GO:0009910	negative regulation of flower development	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010564	regulation of cell cycle process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010965	regulation of mitotic sister chromatid separation	IEA	AHRD
CC	GO:0015630	microtubule cytoskeleton	IEA	AHRD
BP	GO:0015931	nucleobase-containing compound transport	None	Extended
CC	GO:0016020	membrane	IEA	AHRD
BP	GO:0016973	poly(A)+ mRNA export from nucleus	IEA	AHRD
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
CC	GO:0030054	cell junction	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031399	regulation of protein modification process	None	Extended
BP	GO:0031400	negative regulation of protein modification process	None	Extended
BP	GO:0032386	regulation of intracellular transport	None	Extended
BP	GO:0032388	positive regulation of intracellular transport	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032879	regulation of localization	None	Extended
BP	GO:0032880	regulation of protein localization	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033043	regulation of organelle organization	None	Extended
BP	GO:0033044	regulation of chromosome organization	IEA	AHRD
BP	GO:0033157	regulation of intracellular protein transport	None	Extended
BP	GO:0033233	regulation of protein sumoylation	None	Extended
BP	GO:0033234	negative regulation of protein sumoylation	IEA	AHRD
BP	GO:0033554	cellular response to stress	IEA	AHRD
CC	GO:0034399	nuclear periphery	IEA	AHRD
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0046822	regulation of nucleocytoplasmic transport	IEA	AHRD
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0048437	floral organ development	None	Extended
BP	GO:0048443	stamen development	IEA	AHRD
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048581	negative regulation of post-embryonic development	None	Extended
BP	GO:0048827	phyllome development	None	Extended
BP	GO:0048831	regulation of shoot system development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050657	nucleic acid transport	None	Extended
BP	GO:0050658	RNA transport	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051028	mRNA transport	None	Extended
BP	GO:0051049	regulation of transport	None	Extended
BP	GO:0051050	positive regulation of transport	None	Extended
BP	GO:0051093	negative regulation of developmental process	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051168	nuclear export	None	Extended
BP	GO:0051169	nuclear transport	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051222	positive regulation of protein transport	None	Extended
BP	GO:0051223	regulation of protein transport	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051236	establishment of RNA localization	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051241	negative regulation of multicellular organismal process	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051248	negative regulation of protein metabolic process	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0051726	regulation of cell cycle	None	Extended
BP	GO:0051983	regulation of chromosome segregation	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0060341	regulation of cellular localization	None	Extended
BP	GO:0060968	obsolete regulation of gene silencing	IEA	AHRD
BP	GO:0065007	biological regulation	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0070201	regulation of establishment of protein localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090316	positive regulation of intracellular protein transport	IEA	AHRD
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0099402	plant organ development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903320	regulation of protein modification by small protein conjugation or removal	None	Extended
BP	GO:1903321	negative regulation of protein modification by small protein conjugation or removal	None	Extended
BP	GO:1903829	positive regulation of protein localization	None	Extended
BP	GO:1904951	positive regulation of establishment of protein localization	None	Extended
BP	GO:1905818	regulation of chromosome separation	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEA	AHRD
BP	GO:2000241	regulation of reproductive process	None	Extended
BP	GO:2000242	negative regulation of reproductive process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000373	Group II intron splicing	IEP	Predict GO terms from Neighborhoods
BP	GO:0000725	recombinational repair	IEP	Predict GO terms from Neighborhoods
BP	GO:0001819	positive regulation of cytokine production	IEP	Predict GO terms from Neighborhoods
BP	GO:0002697	regulation of immune effector process	IEP	Predict GO terms from Neighborhoods
BP	GO:0002699	positive regulation of immune effector process	IEP	Predict GO terms from Neighborhoods
BP	GO:0002700	regulation of production of molecular mediator of immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002702	positive regulation of production of molecular mediator of immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002703	regulation of leukocyte mediated immunity	IEP	Predict GO terms from Neighborhoods
BP	GO:0002705	positive regulation of leukocyte mediated immunity	IEP	Predict GO terms from Neighborhoods
BP	GO:0002718	regulation of cytokine production involved in immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002720	positive regulation of cytokine production involved in immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002730	regulation of dendritic cell cytokine production	IEP	Predict GO terms from Neighborhoods
BP	GO:0002732	positive regulation of dendritic cell cytokine production	IEP	Predict GO terms from Neighborhoods
BP	GO:0002733	regulation of myeloid dendritic cell cytokine production	IEP	Predict GO terms from Neighborhoods
BP	GO:0002735	positive regulation of myeloid dendritic cell cytokine production	IEP	Predict GO terms from Neighborhoods
BP	GO:0002886	regulation of myeloid leukocyte mediated immunity	IEP	Predict GO terms from Neighborhoods
BP	GO:0002888	positive regulation of myeloid leukocyte mediated immunity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003678	DNA helicase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003724	RNA helicase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003725	double-stranded RNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0004386	helicase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004712	protein serine/threonine/tyrosine kinase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005876	spindle microtubule	IEP	Predict GO terms from Neighborhoods
CC	GO:0005881	cytoplasmic microtubule	IEP	Predict GO terms from Neighborhoods
BP	GO:0006259	DNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006261	DNA-templated DNA replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0006281	DNA repair	IEP	Predict GO terms from Neighborhoods
BP	GO:0006366	transcription by RNA polymerase II	IEP	Predict GO terms from Neighborhoods
BP	GO:0006901	vesicle coating	IEP	Predict GO terms from Neighborhoods
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0007020	microtubule nucleation	IEP	Predict GO terms from Neighborhoods
BP	GO:0007030	Golgi organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007622	rhythmic behavior	IEP	Predict GO terms from Neighborhoods
MF	GO:0008186	ATP-dependent activity, acting on RNA	IEP	Predict GO terms from Neighborhoods
BP	GO:0008356	asymmetric cell division	IEP	Predict GO terms from Neighborhoods
BP	GO:0009967	positive regulation of signal transduction	IEP	Predict GO terms from Neighborhoods
BP	GO:0010070	zygote asymmetric cell division	IEP	Predict GO terms from Neighborhoods
BP	GO:0010647	positive regulation of cell communication	IEP	Predict GO terms from Neighborhoods
MF	GO:0017069	snRNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0017151	DEAD/H-box RNA helicase binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0023056	positive regulation of signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0030031	cell projection assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0030177	positive regulation of Wnt signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0030178	negative regulation of Wnt signaling pathway	IEP	Predict GO terms from Neighborhoods
CC	GO:0030426	growth cone	IEP	Predict GO terms from Neighborhoods
MF	GO:0030515	snoRNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0032091	negative regulation of protein binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0032392	DNA geometric change	IEP	Predict GO terms from Neighborhoods
BP	GO:0032436	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0032508	DNA duplex unwinding	IEP	Predict GO terms from Neighborhoods
BP	GO:0032922	circadian regulation of gene expression	IEP	Predict GO terms from Neighborhoods
CC	GO:0033116	endoplasmic reticulum-Golgi intermediate compartment membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0034067	protein localization to Golgi apparatus	IEP	Predict GO terms from Neighborhoods
MF	GO:0035198	miRNA binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0036064	ciliary basal body	IEP	Predict GO terms from Neighborhoods
BP	GO:0036292	DNA rewinding	IEP	Predict GO terms from Neighborhoods
BP	GO:0043122	regulation of I-kappaB kinase/NF-kappaB signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0043123	positive regulation of I-kappaB kinase/NF-kappaB signaling	IEP	Predict GO terms from Neighborhoods
MF	GO:0043138	3'-5' DNA helicase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0043330	response to exogenous dsRNA	IEP	Predict GO terms from Neighborhoods
BP	GO:0043331	response to dsRNA	IEP	Predict GO terms from Neighborhoods
BP	GO:0043393	regulation of protein binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0043622	cortical microtubule organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0044380	protein localization to cytoskeleton	IEP	Predict GO terms from Neighborhoods
BP	GO:0044782	cilium organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0045664	regulation of neuron differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045666	positive regulation of neuron differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0048208	COPII vesicle coating	IEP	Predict GO terms from Neighborhoods
BP	GO:0048512	circadian behavior	IEP	Predict GO terms from Neighborhoods
MF	GO:0050321	tau-protein kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051100	negative regulation of binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051225	spindle assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0055028	cortical microtubule	IEP	Predict GO terms from Neighborhoods
BP	GO:0060271	cilium assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0060828	regulation of canonical Wnt signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0061081	positive regulation of myeloid leukocyte cytokine production involved in immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0061512	protein localization to cilium	IEP	Predict GO terms from Neighborhoods
MF	GO:0061980	regulatory RNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0062176	R-loop disassembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0070848	response to growth factor	IEP	Predict GO terms from Neighborhoods
BP	GO:0071103	DNA conformation change	IEP	Predict GO terms from Neighborhoods
BP	GO:0071363	cellular response to growth factor stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0071539	protein localization to centrosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0072698	protein localization to microtubule cytoskeleton	IEP	Predict GO terms from Neighborhoods
BP	GO:0090263	positive regulation of canonical Wnt signaling pathway	IEP	Predict GO terms from Neighborhoods
CC	GO:0090395	plant cell papilla	IEP	Predict GO terms from Neighborhoods
CC	GO:0090397	stigma papilla	IEP	Predict GO terms from Neighborhoods
MF	GO:0097322	7SK snRNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0120031	plasma membrane bounded cell projection assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	Predict GO terms from Neighborhoods
MF	GO:0140657	ATP-dependent activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1902003	regulation of amyloid-beta formation	IEP	Predict GO terms from Neighborhoods
BP	GO:1902004	positive regulation of amyloid-beta formation	IEP	Predict GO terms from Neighborhoods
BP	GO:1902991	regulation of amyloid precursor protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902993	positive regulation of amyloid precursor protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1904338	regulation of dopaminergic neuron differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:1904340	positive regulation of dopaminergic neuron differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:1904956	regulation of midbrain dopaminergic neuron differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:1904958	positive regulation of midbrain dopaminergic neuron differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:1905424	regulation of Wnt-mediated midbrain dopaminergic neuron differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:1905426	positive regulation of Wnt-mediated midbrain dopaminergic neuron differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:1905508	protein localization to microtubule organizing center	IEP	Predict GO terms from Neighborhoods
BP	GO:1905515	non-motile cilium assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:1990089	response to nerve growth factor	IEP	Predict GO terms from Neighborhoods
BP	GO:1990090	cellular response to nerve growth factor stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:2000050	regulation of non-canonical Wnt signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:2000052	positive regulation of non-canonical Wnt signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:2000060	positive regulation of ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR012929	TPR/MLP1	1035	1162

External Links

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SOLTUB.AGRIA.G00000021682

Expression Profile

Co-expression Networks

Functional Annotation