SOLTUB.AGRIA.G00000021904

Description : Germacrene synthase

Gene families : OG_02_0001868 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000021904
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_380

Type	GO Term	Name	Evidence	Source
MF	GO:0000287	magnesium ion binding	IEA	AHRD
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	AHRD
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006644	phospholipid metabolic process	None	Extended
BP	GO:0006720	isoprenoid metabolic process	None	Extended
BP	GO:0006721	terpenoid metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008299	isoprenoid biosynthetic process	None	Extended
BP	GO:0008300	isoprenoid catabolic process	None	Extended
BP	GO:0008610	lipid biosynthetic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009395	phospholipid catabolic process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009617	response to bacterium	IEA	AHRD
BP	GO:0009620	response to fungus	IEA	AHRD
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009793	embryo development ending in seed dormancy	None	Extended
MF	GO:0009975	cyclase activity	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0010333	terpene synthase activity	None	Extended
MF	GO:0010334	sesquiterpene synthase activity	None	Extended
BP	GO:0016042	lipid catabolic process	None	Extended
BP	GO:0016101	diterpenoid metabolic process	None	Extended
BP	GO:0016102	diterpenoid biosynthetic process	IEA	AHRD
BP	GO:0016114	terpenoid biosynthetic process	None	Extended
BP	GO:0016115	terpenoid catabolic process	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016835	carbon-oxygen lyase activity	None	Extended
MF	GO:0016838	carbon-oxygen lyase activity, acting on phosphates	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0022412	cellular process involved in reproduction in multicellular organism	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0042214	terpene metabolic process	None	Extended
MF	GO:0042802	identical protein binding	None	Extended
MF	GO:0042803	protein homodimerization activity	IEA	AHRD
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044242	cellular lipid catabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0045165	cell fate commitment	None	Extended
BP	GO:0045338	farnesyl diphosphate metabolic process	None	Extended
BP	GO:0045339	farnesyl diphosphate catabolic process	IEA	AHRD
BP	GO:0046246	terpene biosynthetic process	None	Extended
BP	GO:0046434	organophosphate catabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046983	protein dimerization activity	None	Extended
MF	GO:0047461	(+)-delta-cadinene synthase activity	IEA	AHRD
BP	GO:0048366	leaf development	None	Extended
BP	GO:0048437	floral organ development	None	Extended
BP	GO:0048442	sepal development	IEA	AHRD
BP	GO:0048480	stigma development	IEA	AHRD
BP	GO:0048653	anther development	IEA	AHRD
BP	GO:0048825	cotyledon development	IEA	AHRD
BP	GO:0048827	phyllome development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0051761	sesquiterpene metabolic process	None	Extended
BP	GO:0051762	sesquiterpene biosynthetic process	None	Extended
MF	GO:0052577	germacrene-D synthase activity	IEA	AHRD
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0080016	(-)-E-beta-caryophyllene synthase activity	IEA	AHRD
BP	GO:0090377	seed trichome initiation	IEA	AHRD
BP	GO:0099402	plant organ development	None	Extended
MF	GO:0102904	germacrene C synthase activity	IEA	AHRD
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0120251	hydrocarbon biosynthetic process	None	Extended
BP	GO:0120252	hydrocarbon metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901935	beta-caryophyllene metabolic process	None	Extended
BP	GO:1901937	beta-caryophyllene biosynthetic process	IEA	AHRD

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR008930	Terpenoid_cyclase/PrenylTrfase	17	193
IPR008949	Isoprenoid_synthase_dom_sf	194	222
IPR001906	Terpene_synth_N	11	168

External Links

No external refs found!

SOLTUB.AGRIA.G00000021904

Expression Profile

Co-expression Networks

Functional Annotation