SOLTUB.AGRIA.G00000021964


Description : Replication factor C large subunit


Gene families : OG_02_0009458 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000021964
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_243


Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA AHRD
MF GO:0005515 protein binding IEA AHRD
CC GO:0005634 nucleus IEA AHRD
BP GO:0006259 DNA metabolic process IEA AHRD
BP GO:0006261 DNA-templated DNA replication IEA AHRD
BP GO:0006355 regulation of DNA-templated transcription IEA AHRD
BP GO:0006974 cellular response to DNA damage stimulus IEA AHRD
BP GO:0016043 cellular component organization IEA AHRD
CC GO:0031391 Elg1 RFC-like complex IEA AHRD
BP GO:0045740 positive regulation of DNA replication IEA AHRD
BP GO:0048523 negative regulation of cellular process IEA AHRD
MF GO:0061860 DNA clamp unloader activity IEA AHRD
BP GO:0090618 DNA clamp unloading IEA AHRD
BP GO:1902751 positive regulation of cell cycle G2/M phase transition IEA AHRD
Type GO Term Name Evidence Source
CC GO:0000126 transcription factor TFIIIB complex IEP Predict GO terms from Neighborhoods
BP GO:0000478 endonucleolytic cleavage involved in rRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predict GO terms from Neighborhoods
CC GO:0000506 glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex IEP Predict GO terms from Neighborhoods
CC GO:0000794 condensed nuclear chromosome IEP Predict GO terms from Neighborhoods
MF GO:0000987 cis-regulatory region sequence-specific DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0000992 RNA polymerase III cis-regulatory region sequence-specific DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0000993 RNA polymerase II complex binding IEP Predict GO terms from Neighborhoods
MF GO:0001006 RNA polymerase III type 3 promoter sequence-specific DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0001016 RNA polymerase III transcription regulatory region sequence-specific DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0001098 basal transcription machinery binding IEP Predict GO terms from Neighborhoods
MF GO:0001099 basal RNA polymerase II transcription machinery binding IEP Predict GO terms from Neighborhoods
BP GO:0001833 inner cell mass cell proliferation IEP Predict GO terms from Neighborhoods
BP GO:0001843 neural tube closure IEP Predict GO terms from Neighborhoods
MF GO:0003825 alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity IEP Predict GO terms from Neighborhoods
MF GO:0004805 trehalose-phosphatase activity IEP Predict GO terms from Neighborhoods
MF GO:0004843 cysteine-type deubiquitinase activity IEP Predict GO terms from Neighborhoods
MF GO:0005539 glycosaminoglycan binding IEP Predict GO terms from Neighborhoods
MF GO:0005540 hyaluronic acid binding IEP Predict GO terms from Neighborhoods
CC GO:0005694 chromosome IEP Predict GO terms from Neighborhoods
CC GO:0005880 nuclear microtubule IEP Predict GO terms from Neighborhoods
CC GO:0005938 cell cortex IEP Predict GO terms from Neighborhoods
CC GO:0005946 alpha,alpha-trehalose-phosphate synthase complex (UDP-forming) IEP Predict GO terms from Neighborhoods
BP GO:0005991 trehalose metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0005992 trehalose biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006334 nucleosome assembly IEP Predict GO terms from Neighborhoods
BP GO:0006352 DNA-templated transcription initiation IEP Predict GO terms from Neighborhoods
BP GO:0006384 transcription initiation at RNA polymerase III promoter IEP Predict GO terms from Neighborhoods
BP GO:0006497 protein lipidation IEP Predict GO terms from Neighborhoods
BP GO:0006505 GPI anchor metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006506 GPI anchor biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006661 phosphatidylinositol biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0007049 cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0007163 establishment or maintenance of cell polarity IEP Predict GO terms from Neighborhoods
BP GO:0007264 small GTPase mediated signal transduction IEP Predict GO terms from Neighborhoods
BP GO:0007346 regulation of mitotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0007349 cellularization IEP Predict GO terms from Neighborhoods
BP GO:0007606 sensory perception of chemical stimulus IEP Predict GO terms from Neighborhoods
BP GO:0007608 sensory perception of smell IEP Predict GO terms from Neighborhoods
BP GO:0007635 chemosensory behavior IEP Predict GO terms from Neighborhoods
CC GO:0008023 transcription elongation factor complex IEP Predict GO terms from Neighborhoods
CC GO:0008024 cyclin/CDK positive transcription elongation factor complex IEP Predict GO terms from Neighborhoods
MF GO:0008194 UDP-glycosyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0008353 RNA polymerase II CTD heptapeptide repeat kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0008360 regulation of cell shape IEP Predict GO terms from Neighborhoods
MF GO:0008375 acetylglucosaminyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0009247 glycolipid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009312 oligosaccharide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009828 plant-type cell wall loosening IEP Predict GO terms from Neighborhoods
BP GO:0009832 plant-type cell wall biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0010246 rhamnogalacturonan I biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010342 endosperm cellularization IEP Predict GO terms from Neighborhoods
BP GO:0010395 rhamnogalacturonan I metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010467 gene expression IEP Predict GO terms from Neighborhoods
BP GO:0010821 regulation of mitochondrion organization IEP Predict GO terms from Neighborhoods
BP GO:0010972 negative regulation of G2/M transition of mitotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0016051 carbohydrate biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0016757 glycosyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0017176 phosphatidylinositol N-acetylglucosaminyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0019003 GDP binding IEP Predict GO terms from Neighborhoods
MF GO:0019203 carbohydrate phosphatase activity IEP Predict GO terms from Neighborhoods
CC GO:0019908 nuclear cyclin-dependent protein kinase holoenzyme complex IEP Predict GO terms from Neighborhoods
BP GO:0022402 cell cycle process IEP Predict GO terms from Neighborhoods
BP GO:0022413 reproductive process in single-celled organism IEP Predict GO terms from Neighborhoods
BP GO:0022604 regulation of cell morphogenesis IEP Predict GO terms from Neighborhoods
CC GO:0030427 site of polarized growth IEP Predict GO terms from Neighborhoods
BP GO:0030437 ascospore formation IEP Predict GO terms from Neighborhoods
BP GO:0030447 filamentous growth IEP Predict GO terms from Neighborhoods
BP GO:0030833 regulation of actin filament polymerization IEP Predict GO terms from Neighborhoods
BP GO:0030834 regulation of actin filament depolymerization IEP Predict GO terms from Neighborhoods
CC GO:0031234 extrinsic component of cytoplasmic side of plasma membrane IEP Predict GO terms from Neighborhoods
BP GO:0031567 mitotic cell size control checkpoint signaling IEP Predict GO terms from Neighborhoods
BP GO:0031569 mitotic G2 cell size control checkpoint signaling IEP Predict GO terms from Neighborhoods
BP GO:0032467 positive regulation of cytokinesis IEP Predict GO terms from Neighborhoods
MF GO:0032794 GTPase activating protein binding IEP Predict GO terms from Neighborhoods
CC GO:0032806 carboxy-terminal domain protein kinase complex IEP Predict GO terms from Neighborhoods
BP GO:0032873 negative regulation of stress-activated MAPK cascade IEP Predict GO terms from Neighborhoods
BP GO:0032878 regulation of establishment or maintenance of cell polarity IEP Predict GO terms from Neighborhoods
BP GO:0032954 regulation of cytokinetic process IEP Predict GO terms from Neighborhoods
MF GO:0034211 GTP-dependent protein kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0035148 tube formation IEP Predict GO terms from Neighborhoods
BP GO:0036168 filamentous growth of a population of unicellular organisms in response to heat IEP Predict GO terms from Neighborhoods
BP GO:0036180 filamentous growth of a population of unicellular organisms in response to biotic stimulus IEP Predict GO terms from Neighborhoods
BP GO:0036292 DNA rewinding IEP Predict GO terms from Neighborhoods
BP GO:0042048 olfactory behavior IEP Predict GO terms from Neighborhoods
MF GO:0042393 histone binding IEP Predict GO terms from Neighborhoods
BP GO:0042546 cell wall biogenesis IEP Predict GO terms from Neighborhoods
MF GO:0043138 3'-5' DNA helicase activity IEP Predict GO terms from Neighborhoods
MF GO:0043175 RNA polymerase core enzyme binding IEP Predict GO terms from Neighborhoods
CC GO:0043228 non-membrane-bounded organelle IEP Predict GO terms from Neighborhoods
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predict GO terms from Neighborhoods
BP GO:0043388 positive regulation of DNA binding IEP Predict GO terms from Neighborhoods
BP GO:0043476 pigment accumulation IEP Predict GO terms from Neighborhoods
BP GO:0043478 pigment accumulation in response to UV light IEP Predict GO terms from Neighborhoods
BP GO:0043479 pigment accumulation in tissues in response to UV light IEP Predict GO terms from Neighborhoods
BP GO:0043480 pigment accumulation in tissues IEP Predict GO terms from Neighborhoods
BP GO:0043481 anthocyanin accumulation in tissues in response to UV light IEP Predict GO terms from Neighborhoods
BP GO:0043935 sexual sporulation resulting in formation of a cellular spore IEP Predict GO terms from Neighborhoods
BP GO:0043966 histone H3 acetylation IEP Predict GO terms from Neighborhoods
BP GO:0043983 histone H4-K12 acetylation IEP Predict GO terms from Neighborhoods
BP GO:0044154 histone H3-K14 acetylation IEP Predict GO terms from Neighborhoods
BP GO:0044182 filamentous growth of a population of unicellular organisms IEP Predict GO terms from Neighborhoods
BP GO:0046351 disaccharide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0047484 regulation of response to osmotic stress IEP Predict GO terms from Neighborhoods
BP GO:0048358 mucilage pectin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0048363 mucilage pectin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0048366 leaf development IEP Predict GO terms from Neighborhoods
BP GO:0048497 maintenance of floral organ identity IEP Predict GO terms from Neighborhoods
BP GO:0048646 anatomical structure formation involved in morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0048766 root hair initiation IEP Predict GO terms from Neighborhoods
CC GO:0051285 cell cortex of cell tip IEP Predict GO terms from Neighborhoods
BP GO:0051301 cell division IEP Predict GO terms from Neighborhoods
BP GO:0051365 cellular response to potassium ion starvation IEP Predict GO terms from Neighborhoods
BP GO:0051512 positive regulation of unidimensional cell growth IEP Predict GO terms from Neighborhoods
BP GO:0051516 regulation of bipolar cell growth IEP Predict GO terms from Neighborhoods
BP GO:0051518 positive regulation of bipolar cell growth IEP Predict GO terms from Neighborhoods
BP GO:0051519 activation of bipolar cell growth IEP Predict GO terms from Neighborhoods
BP GO:0051781 positive regulation of cell division IEP Predict GO terms from Neighborhoods
BP GO:0060606 tube closure IEP Predict GO terms from Neighborhoods
BP GO:0061245 establishment or maintenance of bipolar cell polarity IEP Predict GO terms from Neighborhoods
BP GO:0061246 establishment or maintenance of bipolar cell polarity regulating cell shape IEP Predict GO terms from Neighborhoods
BP GO:0065004 protein-DNA complex assembly IEP Predict GO terms from Neighborhoods
MF GO:0070063 RNA polymerase binding IEP Predict GO terms from Neighborhoods
BP GO:0070303 negative regulation of stress-activated protein kinase signaling cascade IEP Predict GO terms from Neighborhoods
BP GO:0070413 trehalose metabolism in response to stress IEP Predict GO terms from Neighborhoods
MF GO:0070577 lysine-acetylated histone binding IEP Predict GO terms from Neighborhoods
BP GO:0070897 transcription preinitiation complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0071554 cell wall organization or biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0071669 plant-type cell wall organization or biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0071824 protein-DNA complex subunit organization IEP Predict GO terms from Neighborhoods
BP GO:0071947 protein deubiquitination involved in ubiquitin-dependent protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0071963 establishment or maintenance of cell polarity regulating cell shape IEP Predict GO terms from Neighborhoods
BP GO:0090379 secondary cell wall biogenesis involved in seed trichome differentiation IEP Predict GO terms from Neighborhoods
CC GO:0090576 RNA polymerase III transcription regulator complex IEP Predict GO terms from Neighborhoods
BP GO:0090615 mitochondrial mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0090617 mitochondrial mRNA 5'-end processing IEP Predict GO terms from Neighborhoods
BP GO:0090700 maintenance of plant organ identity IEP Predict GO terms from Neighborhoods
CC GO:0097575 lateral cell cortex IEP Predict GO terms from Neighborhoods
BP GO:0098781 ncRNA transcription IEP Predict GO terms from Neighborhoods
MF GO:0099122 RNA polymerase II C-terminal domain binding IEP Predict GO terms from Neighborhoods
CC GO:0099568 cytoplasmic region IEP Predict GO terms from Neighborhoods
CC GO:0099738 cell cortex region IEP Predict GO terms from Neighborhoods
MF GO:0102986 trehalose synthase activity IEP Predict GO terms from Neighborhoods
CC GO:0120105 mitotic actomyosin contractile ring, intermediate layer IEP Predict GO terms from Neighborhoods
MF GO:0140033 acetylation-dependent protein binding IEP Predict GO terms from Neighborhoods
MF GO:0140296 general transcription initiation factor binding IEP Predict GO terms from Neighborhoods
BP GO:1901000 regulation of response to salt stress IEP Predict GO terms from Neighborhoods
BP GO:1901879 regulation of protein depolymerization IEP Predict GO terms from Neighborhoods
BP GO:1902412 regulation of mitotic cytokinesis IEP Predict GO terms from Neighborhoods
BP GO:1902472 regulation of mitotic cytokinesis, site selection IEP Predict GO terms from Neighborhoods
BP GO:1902750 negative regulation of cell cycle G2/M phase transition IEP Predict GO terms from Neighborhoods
BP GO:1903066 regulation of protein localization to cell tip IEP Predict GO terms from Neighborhoods
BP GO:1903067 negative regulation of protein localization to cell tip IEP Predict GO terms from Neighborhoods
BP GO:1903077 negative regulation of protein localization to plasma membrane IEP Predict GO terms from Neighborhoods
BP GO:1903137 regulation of cell wall integrity MAPK cascade IEP Predict GO terms from Neighborhoods
BP GO:1903138 negative regulation of cell wall integrity MAPK cascade IEP Predict GO terms from Neighborhoods
BP GO:1903436 regulation of mitotic cytokinetic process IEP Predict GO terms from Neighborhoods
BP GO:1903438 positive regulation of mitotic cytokinetic process IEP Predict GO terms from Neighborhoods
BP GO:1903490 positive regulation of mitotic cytokinesis IEP Predict GO terms from Neighborhoods
BP GO:1903617 positive regulation of mitotic cytokinesis, site selection IEP Predict GO terms from Neighborhoods
BP GO:1904035 regulation of epithelial cell apoptotic process IEP Predict GO terms from Neighborhoods
BP GO:1904037 positive regulation of epithelial cell apoptotic process IEP Predict GO terms from Neighborhoods
BP GO:1904376 negative regulation of protein localization to cell periphery IEP Predict GO terms from Neighborhoods
BP GO:1905476 negative regulation of protein localization to membrane IEP Predict GO terms from Neighborhoods
CC GO:1990234 transferase complex IEP Predict GO terms from Neighborhoods
BP GO:2000033 regulation of seed dormancy process IEP Predict GO terms from Neighborhoods
BP GO:2000073 regulation of cytokinesis, site selection IEP Predict GO terms from Neighborhoods
BP GO:2000076 positive regulation of cytokinesis, site selection IEP Predict GO terms from Neighborhoods
BP GO:2000769 regulation of establishment or maintenance of cell polarity regulating cell shape IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR027417 P-loop_NTPase 423 720
No external refs found!