SOLTUB.AGRIA.G00000022897


Description : RNA polymerase sigma factor sigA


Gene families : OG_02_0001806 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000022897
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_152


Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA AHRD
BP GO:0006352 DNA-templated transcription initiation IEA AHRD
BP GO:0006355 regulation of DNA-templated transcription IEA AHRD
CC GO:0009507 chloroplast IEA AHRD
MF GO:0016987 sigma factor activity IEA AHRD
BP GO:0071461 cellular response to redox state IEA AHRD
BP GO:0071482 cellular response to light stimulus IEA AHRD
BP GO:0080005 photosystem stoichiometry adjustment IEA AHRD
Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0000097 sulfur amino acid biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0004072 aspartate kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0004412 homoserine dehydrogenase activity IEP Predict GO terms from Neighborhoods
BP GO:0006448 regulation of translational elongation IEP Predict GO terms from Neighborhoods
BP GO:0006470 protein dephosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0006553 lysine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006555 methionine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006566 threonine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006714 sesquiterpenoid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006793 phosphorus metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006796 phosphate-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006995 cellular response to nitrogen starvation IEP Predict GO terms from Neighborhoods
BP GO:0009066 aspartate family amino acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009069 serine family amino acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009070 serine family amino acid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009085 lysine biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009086 methionine biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009088 threonine biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Predict GO terms from Neighborhoods
BP GO:0009090 homoserine biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009092 homoserine metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0009532 plastid stroma IEP Predict GO terms from Neighborhoods
CC GO:0009535 chloroplast thylakoid membrane IEP Predict GO terms from Neighborhoods
CC GO:0009570 chloroplast stroma IEP Predict GO terms from Neighborhoods
BP GO:0009687 abscisic acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009688 abscisic acid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009819 drought recovery IEP Predict GO terms from Neighborhoods
BP GO:0010065 primary meristem tissue development IEP Predict GO terms from Neighborhoods
BP GO:0010068 protoderm histogenesis IEP Predict GO terms from Neighborhoods
CC GO:0010287 plastoglobule IEP Predict GO terms from Neighborhoods
BP GO:0010528 regulation of transposition IEP Predict GO terms from Neighborhoods
CC GO:0010598 NAD(P)H dehydrogenase complex (plastoquinone) IEP Predict GO terms from Neighborhoods
MF GO:0015035 protein-disulfide reductase activity IEP Predict GO terms from Neighborhoods
MF GO:0015036 disulfide oxidoreductase activity IEP Predict GO terms from Neighborhoods
BP GO:0016106 sesquiterpenoid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0016108 tetraterpenoid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016109 tetraterpenoid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0016116 carotenoid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016117 carotenoid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0016122 xanthophyll metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016123 xanthophyll biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0016301 kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0016311 dephosphorylation IEP Predict GO terms from Neighborhoods
MF GO:0016713 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen IEP Predict GO terms from Neighborhoods
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP Predict GO terms from Neighborhoods
MF GO:0019202 amino acid kinase activity IEP Predict GO terms from Neighborhoods
CC GO:0034357 photosynthetic membrane IEP Predict GO terms from Neighborhoods
CC GO:0042170 plastid membrane IEP Predict GO terms from Neighborhoods
BP GO:0042594 response to starvation IEP Predict GO terms from Neighborhoods
CC GO:0042651 thylakoid membrane IEP Predict GO terms from Neighborhoods
MF GO:0043022 ribosome binding IEP Predict GO terms from Neighborhoods
BP GO:0043288 apocarotenoid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0043289 apocarotenoid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0043393 regulation of protein binding IEP Predict GO terms from Neighborhoods
BP GO:0045900 negative regulation of translational elongation IEP Predict GO terms from Neighborhoods
BP GO:0046451 diaminopimelate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046467 membrane lipid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0048508 embryonic meristem development IEP Predict GO terms from Neighborhoods
BP GO:0048871 multicellular organismal homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0050878 regulation of body fluid levels IEP Predict GO terms from Neighborhoods
BP GO:0050891 multicellular organismal water homeostasis IEP Predict GO terms from Neighborhoods
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Predict GO terms from Neighborhoods
MF GO:0052662 zeaxanthin epoxidase activity IEP Predict GO terms from Neighborhoods
CC GO:0055035 plastid thylakoid membrane IEP Predict GO terms from Neighborhoods
BP GO:0055072 iron ion homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0062197 cellular response to chemical stress IEP Predict GO terms from Neighborhoods
BP GO:0070894 regulation of transposon integration IEP Predict GO terms from Neighborhoods
BP GO:0071369 cellular response to ethylene stimulus IEP Predict GO terms from Neighborhoods
MF GO:0071949 FAD binding IEP Predict GO terms from Neighborhoods
BP GO:0080177 plastoglobule organization IEP Predict GO terms from Neighborhoods
BP GO:0090558 plant epidermis development IEP Predict GO terms from Neighborhoods
MF GO:0097573 glutathione oxidoreductase activity IEP Predict GO terms from Neighborhoods
BP GO:1900459 positive regulation of brassinosteroid mediated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:1901031 regulation of response to reactive oxygen species IEP Predict GO terms from Neighborhoods
BP GO:1902644 tertiary alcohol metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1902645 tertiary alcohol biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1902882 regulation of response to oxidative stress IEP Predict GO terms from Neighborhoods
BP GO:1904526 regulation of microtubule binding IEP Predict GO terms from Neighborhoods
BP GO:1990641 response to iron ion starvation IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR013325 RNA_pol_sigma_r2 187 336
IPR013324 RNA_pol_sigma_r3/r4-like 410 498
IPR014284 RNA_pol_sigma-70_dom 262 492
IPR007630 RNA_pol_sigma70_r4 442 491
IPR007624 RNA_pol_sigma70_r3 345 416
IPR013324 RNA_pol_sigma_r3/r4-like 338 394
IPR007627 RNA_pol_sigma70_r2 268 335
No external refs found!