| CC | GO:0000151 | ubiquitin ligase complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000209 | protein polyubiquitination | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000724 | double-strand break repair via homologous recombination | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000725 | recombinational repair | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0000793 | condensed chromosome | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0001817 | regulation of cytokine production | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0001818 | negative regulation of cytokine production | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0002682 | regulation of immune system process | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0004842 | ubiquitin-protein transferase activity | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005694 | chromosome | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006259 | DNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006281 | DNA repair | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006302 | double-strand break repair | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006310 | DNA recombination | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006479 | protein methylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0007276 | gamete generation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0007283 | spermatogenesis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0008213 | protein alkylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009894 | regulation of catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009896 | positive regulation of catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009934 | regulation of meristem structural organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009967 | positive regulation of signal transduction | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009968 | negative regulation of signal transduction | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010074 | maintenance of meristem identity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010078 | maintenance of root meristem identity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010212 | response to ionizing radiation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010332 | response to gamma radiation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010492 | maintenance of shoot apical meristem identity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010558 | negative regulation of macromolecule biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010629 | negative regulation of gene expression | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010647 | positive regulation of cell communication | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010648 | negative regulation of cell communication | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010941 | regulation of cell death | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010942 | positive regulation of cell death | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010948 | negative regulation of cell cycle process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016567 | protein ubiquitination | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016570 | histone modification | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016571 | histone methylation | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0016604 | nuclear body | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0018022 | peptidyl-lysine methylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0018023 | peptidyl-lysine trimethylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0018193 | peptidyl-amino acid modification | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0018205 | peptidyl-lysine modification | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0019787 | ubiquitin-like protein transferase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0019827 | stem cell population maintenance | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0023056 | positive regulation of signaling | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0023057 | negative regulation of signaling | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031056 | regulation of histone modification | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031057 | negative regulation of histone modification | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031058 | positive regulation of histone modification | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031060 | regulation of histone methylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031062 | positive regulation of histone methylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031327 | negative regulation of cellular biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031399 | regulation of protein modification process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031400 | negative regulation of protein modification process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031401 | positive regulation of protein modification process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032259 | methylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032386 | regulation of intracellular transport | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032446 | protein modification by small protein conjugation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0033157 | regulation of intracellular protein transport | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0034968 | histone lysine methylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0035065 | regulation of histone acetylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0035066 | positive regulation of histone acetylation | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0035770 | ribonucleoprotein granule | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0036464 | cytoplasmic ribonucleoprotein granule | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0042981 | regulation of apoptotic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043065 | positive regulation of apoptotic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043066 | negative regulation of apoptotic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043067 | regulation of programmed cell death | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043068 | positive regulation of programmed cell death | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043069 | negative regulation of programmed cell death | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043414 | macromolecule methylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043903 | regulation of biological process involved in symbiotic interaction | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043933 | protein-containing complex organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0044087 | regulation of cellular component biogenesis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0044093 | positive regulation of molecular function | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0045786 | negative regulation of cell cycle | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0045892 | negative regulation of DNA-templated transcription | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0045934 | negative regulation of nucleobase-containing compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0046596 | regulation of viral entry into host cell | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0046822 | regulation of nucleocytoplasmic transport | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0046983 | protein dimerization activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048232 | male gamete generation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048366 | leaf development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048609 | multicellular organismal reproductive process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048827 | phyllome development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0050776 | regulation of immune response | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0050792 | regulation of viral process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051090 | regulation of DNA-binding transcription factor activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051091 | positive regulation of DNA-binding transcription factor activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051241 | negative regulation of multicellular organismal process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051247 | positive regulation of protein metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051248 | negative regulation of protein metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051253 | negative regulation of RNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051568 | histone H3-K4 methylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0052372 | modulation by symbiont of entry into host | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0060548 | negative regulation of cell death | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0065003 | protein-containing complex assembly | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0065004 | protein-DNA complex assembly | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0071214 | cellular response to abiotic stimulus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0071478 | cellular response to radiation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0071479 | cellular response to ionizing radiation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0071480 | cellular response to gamma radiation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0071824 | protein-DNA complex subunit organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0080182 | histone H3-K4 trimethylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0098727 | maintenance of cell number | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0104004 | cellular response to environmental stimulus | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0140535 | intracellular protein-containing complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1901983 | regulation of protein acetylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1901985 | positive regulation of protein acetylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1902531 | regulation of intracellular signal transduction | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1902533 | positive regulation of intracellular signal transduction | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1902679 | negative regulation of RNA biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1903507 | negative regulation of nucleic acid-templated transcription | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1903900 | regulation of viral life cycle | IEP | Predict GO terms from Neighborhoods |
| CC | GO:1990234 | transferase complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:2000756 | regulation of peptidyl-lysine acetylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:2000758 | positive regulation of peptidyl-lysine acetylation | IEP | Predict GO terms from Neighborhoods |