SOLTUB.AGRIA.G00000023436

Description : Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein

Gene families : OG_02_0015519 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000023436
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_115

Target	Alias	Description	ECC score	Gene Family Method
SOLTUB.AGRIA.G00000023438	No alias	Nuclear transport factor 2 (NTF2) family protein with...	0.05	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000023438	No alias	Nuclear transport factor 2 (NTF2) family protein with...	0.05	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000023438	No alias	Nuclear transport factor 2 (NTF2) family protein with...	0.05	Orthogroups with 8 Potato genotypes

Type	GO Term	Name	Evidence	Source
BP	GO:0001101	response to acid chemical	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	IEA	AHRD
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	AHRD
CC	GO:0005737	cytoplasm	IEA	AHRD
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0006996	organelle organization	IEA	AHRD
BP	GO:0007165	signal transduction	None	Extended
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008186	ATP-dependent activity, acting on RNA	IEA	AHRD
BP	GO:0009414	response to water deprivation	IEA	AHRD
BP	GO:0009415	response to water	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009738	abscisic acid-activated signaling pathway	IEA	AHRD
BP	GO:0009755	hormone-mediated signaling pathway	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009890	negative regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022607	cellular component assembly	IEA	AHRD
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031327	negative regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0045892	negative regulation of DNA-templated transcription	IEA	AHRD
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0048518	positive regulation of biological process	IEA	AHRD
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051253	negative regulation of RNA metabolic process	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0098542	defense response to other organism	IEA	AHRD
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	IEA	AHRD
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1902679	negative regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903507	negative regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000963	mitochondrial RNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0000966	RNA 5'-end processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0001817	regulation of cytokine production	IEP	Predict GO terms from Neighborhoods
BP	GO:0001819	positive regulation of cytokine production	IEP	Predict GO terms from Neighborhoods
CC	GO:0002199	zona pellucida receptor complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0003724	RNA helicase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003746	translation elongation factor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003924	GTPase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004016	adenylate cyclase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004364	glutathione transferase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005618	cell wall	IEP	Predict GO terms from Neighborhoods
CC	GO:0005739	mitochondrion	IEP	Predict GO terms from Neighborhoods
CC	GO:0005775	vacuolar lumen	IEP	Predict GO terms from Neighborhoods
CC	GO:0005832	chaperonin-containing T-complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0006352	DNA-templated transcription initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006403	RNA localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0006414	translational elongation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006458	'de novo' protein folding	IEP	Predict GO terms from Neighborhoods
BP	GO:0006518	peptide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006749	glutathione metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0007339	binding of sperm to zona pellucida	IEP	Predict GO terms from Neighborhoods
BP	GO:0008037	cell recognition	IEP	Predict GO terms from Neighborhoods
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0009058	biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009059	macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0009975	cyclase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009988	cell-cell recognition	IEP	Predict GO terms from Neighborhoods
BP	GO:0010043	response to zinc ion	IEP	Predict GO terms from Neighborhoods
BP	GO:0010467	gene expression	IEP	Predict GO terms from Neighborhoods
CC	GO:0010494	cytoplasmic stress granule	IEP	Predict GO terms from Neighborhoods
BP	GO:0010638	positive regulation of organelle organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0016556	mRNA modification	IEP	Predict GO terms from Neighborhoods
MF	GO:0016849	phosphorus-oxygen lyase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0019722	calcium-mediated signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0019932	second-messenger-mediated signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0030111	regulation of Wnt signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0030178	negative regulation of Wnt signaling pathway	IEP	Predict GO terms from Neighborhoods
CC	GO:0030312	external encapsulating structure	IEP	Predict GO terms from Neighborhoods
CC	GO:0031983	vesicle lumen	IEP	Predict GO terms from Neighborhoods
BP	GO:0032204	regulation of telomere maintenance	IEP	Predict GO terms from Neighborhoods
BP	GO:0032206	positive regulation of telomere maintenance	IEP	Predict GO terms from Neighborhoods
BP	GO:0032210	regulation of telomere maintenance via telomerase	IEP	Predict GO terms from Neighborhoods
BP	GO:0032212	positive regulation of telomere maintenance via telomerase	IEP	Predict GO terms from Neighborhoods
BP	GO:0032479	regulation of type I interferon production	IEP	Predict GO terms from Neighborhoods
BP	GO:0032481	positive regulation of type I interferon production	IEP	Predict GO terms from Neighborhoods
BP	GO:0032543	mitochondrial translation	IEP	Predict GO terms from Neighborhoods
BP	GO:0033043	regulation of organelle organization	IEP	Predict GO terms from Neighborhoods
MF	GO:0033677	DNA/RNA helicase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0034774	secretory granule lumen	IEP	Predict GO terms from Neighborhoods
BP	GO:0035036	sperm-egg recognition	IEP	Predict GO terms from Neighborhoods
CC	GO:0035578	azurophil granule lumen	IEP	Predict GO terms from Neighborhoods
BP	GO:0043170	macromolecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043603	cellular amide metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0044183	protein folding chaperone	IEP	Predict GO terms from Neighborhoods
BP	GO:0044249	cellular biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0044297	cell body	IEP	Predict GO terms from Neighborhoods
MF	GO:0045182	translation regulator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0050821	protein stabilization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051054	positive regulation of DNA metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0051082	unfolded protein binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051084	'de novo' post-translational protein folding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051086	chaperone mediated protein folding independent of cofactor	IEP	Predict GO terms from Neighborhoods
BP	GO:0051130	positive regulation of cellular component organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051131	chaperone-mediated protein complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0051347	positive regulation of transferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051972	regulation of telomerase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051973	positive regulation of telomerase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0060205	cytoplasmic vesicle lumen	IEP	Predict GO terms from Neighborhoods
BP	GO:0060828	regulation of canonical Wnt signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0061077	chaperone-mediated protein folding	IEP	Predict GO terms from Neighborhoods
BP	GO:0062028	regulation of stress granule assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0062029	positive regulation of stress granule assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0070202	regulation of establishment of protein localization to chromosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0070203	regulation of establishment of protein localization to telomere	IEP	Predict GO terms from Neighborhoods
BP	GO:0080156	mitochondrial mRNA modification	IEP	Predict GO terms from Neighborhoods
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0090090	negative regulation of canonical Wnt signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0090615	mitochondrial mRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0090617	mitochondrial mRNA 5'-end processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0090666	scaRNA localization to Cajal body	IEP	Predict GO terms from Neighborhoods
BP	GO:0090670	RNA localization to Cajal body	IEP	Predict GO terms from Neighborhoods
BP	GO:0090685	RNA localization to nucleus	IEP	Predict GO terms from Neighborhoods
CC	GO:0099080	supramolecular complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0101031	chaperone complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0140053	mitochondrial gene expression	IEP	Predict GO terms from Neighborhoods
BP	GO:1900864	mitochondrial RNA modification	IEP	Predict GO terms from Neighborhoods
BP	GO:1901576	organic substance biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901998	toxin transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1902115	regulation of organelle assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:1902117	positive regulation of organelle assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:1903829	positive regulation of protein localization	IEP	Predict GO terms from Neighborhoods
BP	GO:1904356	regulation of telomere maintenance via telomere lengthening	IEP	Predict GO terms from Neighborhoods
BP	GO:1904358	positive regulation of telomere maintenance via telomere lengthening	IEP	Predict GO terms from Neighborhoods
BP	GO:1904814	regulation of protein localization to chromosome, telomeric region	IEP	Predict GO terms from Neighborhoods
BP	GO:1904816	positive regulation of protein localization to chromosome, telomeric region	IEP	Predict GO terms from Neighborhoods
BP	GO:1904851	positive regulation of establishment of protein localization to telomere	IEP	Predict GO terms from Neighborhoods
BP	GO:1904872	regulation of telomerase RNA localization to Cajal body	IEP	Predict GO terms from Neighborhoods
BP	GO:1904874	positive regulation of telomerase RNA localization to Cajal body	IEP	Predict GO terms from Neighborhoods
BP	GO:1904951	positive regulation of establishment of protein localization	IEP	Predict GO terms from Neighborhoods
BP	GO:2000278	regulation of DNA biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2000573	positive regulation of DNA biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2001252	positive regulation of chromosome organization	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR032710	NTF2-like_dom_sf	192	312
IPR035979	RBD_domain_sf	438	588
IPR002075	NTF2_dom	195	311
IPR000504	RRM_dom	441	499
IPR032308	TDBD	162	196

External Links

No external refs found!

SOLTUB.AGRIA.G00000023436

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation