SOLTUB.AGRIA.G00000002486

Description : Skp1-like protein 1b

Gene families : OG_02_0042578 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000002486
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_139

Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	AHRD
CC	GO:0005737	cytoplasm	IEA	AHRD
CC	GO:0005856	cytoskeleton	IEA	AHRD
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
CC	GO:0019005	SCF ubiquitin ligase complex	IEA	AHRD
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019904	protein domain specific binding	IEA	AHRD
BP	GO:0030163	protein catabolic process	IEA	AHRD
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
CC	GO:0031461	cullin-RING ubiquitin ligase complex	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0042221	response to chemical	IEA	AHRD
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	IEA	AHRD
BP	GO:0048856	anatomical structure development	IEA	AHRD
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051052	regulation of DNA metabolic process	IEA	AHRD
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0071944	cell periphery	IEA	AHRD
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000419	RNA polymerase V complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0004312	fatty acid synthase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005337	nucleoside transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005576	extracellular region	IEP	Predict GO terms from Neighborhoods
BP	GO:0007549	dosage compensation	IEP	Predict GO terms from Neighborhoods
MF	GO:0008134	transcription factor binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0009048	dosage compensation by inactivation of X chromosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0009785	blue light signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0010262	somatic embryogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010344	seed oilbody biogenesis	IEP	Predict GO terms from Neighborhoods
CC	GO:0012511	monolayer-surrounded lipid storage body	IEP	Predict GO terms from Neighborhoods
BP	GO:0015858	nucleoside transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0016297	acyl-[acyl-carrier-protein] hydrolase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0016602	CCAAT-binding factor complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0016790	thiolester hydrolase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0019915	lipid storage	IEP	Predict GO terms from Neighborhoods
BP	GO:0019953	sexual reproduction	IEP	Predict GO terms from Neighborhoods
CC	GO:0031902	late endosome membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0034389	lipid droplet organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0040029	epigenetic regulation of gene expression	IEP	Predict GO terms from Neighborhoods
BP	GO:0044030	regulation of DNA methylation	IEP	Predict GO terms from Neighborhoods
CC	GO:0048046	apoplast	IEP	Predict GO terms from Neighborhoods
BP	GO:0051512	positive regulation of unidimensional cell growth	IEP	Predict GO terms from Neighborhoods
CC	GO:0055029	nuclear DNA-directed RNA polymerase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0060816	random inactivation of X chromosome	IEP	Predict GO terms from Neighborhoods
BP	GO:1900095	regulation of dosage compensation by inactivation of X chromosome	IEP	Predict GO terms from Neighborhoods
BP	GO:1901642	nucleoside transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1990823	response to leukemia inhibitory factor	IEP	Predict GO terms from Neighborhoods
BP	GO:1990830	cellular response to leukemia inhibitory factor	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR036296	SKP1-like_dim_sf	119	175
IPR016072	Skp1_comp_dimer	146	175
IPR011333	SKP1/BTB/POZ_sf	53	114
IPR016073	Skp1_comp_POZ	54	112
IPR016073	Skp1_comp_POZ	19	45

External Links

No external refs found!

SOLTUB.AGRIA.G00000002486

Expression Profile

Co-expression Networks

Functional Annotation