SOLTUB.AGRIA.G00000025020


Description : phytochrome interacting factor 3


Gene families : OG_02_0020349 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000025020
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_152


Type GO Term Name Evidence Source
MF GO:0000976 transcription cis-regulatory region binding IEA AHRD
MF GO:0003700 DNA-binding transcription factor activity IEA AHRD
CC GO:0005634 nucleus IEA AHRD
BP GO:0006783 heme biosynthetic process IEA AHRD
BP GO:0007623 circadian rhythm IEA AHRD
BP GO:0009409 response to cold IEA AHRD
CC GO:0009506 plasmodesma IEA AHRD
CC GO:0009535 chloroplast thylakoid membrane IEA AHRD
BP GO:0009567 double fertilization forming a zygote and endosperm IEA AHRD
BP GO:0009637 response to blue light IEA AHRD
BP GO:0009704 de-etiolation IEA AHRD
BP GO:0009740 gibberellic acid mediated signaling pathway IEA AHRD
CC GO:0009941 chloroplast envelope IEA AHRD
BP GO:0009959 negative gravitropism IEA AHRD
BP GO:0010100 negative regulation of photomorphogenesis IEA AHRD
BP GO:0010161 red light signaling pathway IEA AHRD
BP GO:0010187 negative regulation of seed germination IEA AHRD
BP GO:0010218 response to far red light IEA AHRD
CC GO:0010287 plastoglobule IEA AHRD
MF GO:0010313 phytochrome binding IEA AHRD
BP GO:0015995 chlorophyll biosynthetic process IEA AHRD
MF GO:0016491 oxidoreductase activity IEA AHRD
BP GO:0031539 positive regulation of anthocyanin metabolic process IEA AHRD
BP GO:0042548 regulation of photosynthesis, light reaction IEA AHRD
MF GO:0042802 identical protein binding IEA AHRD
BP GO:0045893 positive regulation of DNA-templated transcription IEA AHRD
MF GO:0046983 protein dimerization activity IEA AHRD
BP GO:0048440 carpel development IEA AHRD
BP GO:0080006 internode patterning IEA AHRD
BP GO:0080113 regulation of seed growth IEA AHRD
BP GO:0090229 negative regulation of red or far-red light signaling pathway IEA AHRD
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predict GO terms from Neighborhoods
BP GO:0001910 regulation of leukocyte mediated cytotoxicity IEP Predict GO terms from Neighborhoods
BP GO:0002474 antigen processing and presentation of peptide antigen via MHC class I IEP Predict GO terms from Neighborhoods
BP GO:0002483 antigen processing and presentation of endogenous peptide antigen IEP Predict GO terms from Neighborhoods
BP GO:0002706 regulation of lymphocyte mediated immunity IEP Predict GO terms from Neighborhoods
MF GO:0004017 adenylate kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0004127 cytidylate kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0004176 ATP-dependent peptidase activity IEP Predict GO terms from Neighborhoods
MF GO:0004321 fatty-acyl-CoA synthase activity IEP Predict GO terms from Neighborhoods
MF GO:0004550 nucleoside diphosphate kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0004791 thioredoxin-disulfide reductase activity IEP Predict GO terms from Neighborhoods
CC GO:0005777 peroxisome IEP Predict GO terms from Neighborhoods
BP GO:0005984 disaccharide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0005985 sucrose metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0005986 sucrose biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0005996 monosaccharide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006000 fructose metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006002 fructose 6-phosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006006 glucose metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006094 gluconeogenesis IEP Predict GO terms from Neighborhoods
BP GO:0006195 purine nucleotide catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006743 ubiquinone metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006744 ubiquinone biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006775 fat-soluble vitamin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006793 phosphorus metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006796 phosphate-containing compound metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0008252 nucleotidase activity IEP Predict GO terms from Neighborhoods
MF GO:0008253 5'-nucleotidase activity IEP Predict GO terms from Neighborhoods
MF GO:0008465 glycerate dehydrogenase activity IEP Predict GO terms from Neighborhoods
MF GO:0008887 glycerate kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0009123 nucleoside monophosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009125 nucleoside monophosphate catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009128 purine nucleoside monophosphate catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009154 purine ribonucleotide catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009158 ribonucleoside monophosphate catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009169 purine ribonucleoside monophosphate catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009261 ribonucleotide catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009271 phage shock IEP Predict GO terms from Neighborhoods
BP GO:0009311 oligosaccharide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009312 oligosaccharide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009399 nitrogen fixation IEP Predict GO terms from Neighborhoods
CC GO:0009508 plastid chromosome IEP Predict GO terms from Neighborhoods
CC GO:0009521 photosystem IEP Predict GO terms from Neighborhoods
CC GO:0009523 photosystem II IEP Predict GO terms from Neighborhoods
CC GO:0009532 plastid stroma IEP Predict GO terms from Neighborhoods
CC GO:0009570 chloroplast stroma IEP Predict GO terms from Neighborhoods
CC GO:0009575 chromoplast stroma IEP Predict GO terms from Neighborhoods
CC GO:0009579 thylakoid IEP Predict GO terms from Neighborhoods
BP GO:0009644 response to high light intensity IEP Predict GO terms from Neighborhoods
BP GO:0009657 plastid organization IEP Predict GO terms from Neighborhoods
BP GO:0009658 chloroplast organization IEP Predict GO terms from Neighborhoods
BP GO:0009668 plastid membrane organization IEP Predict GO terms from Neighborhoods
BP GO:0009773 photosynthetic electron transport in photosystem I IEP Predict GO terms from Neighborhoods
BP GO:0009854 oxidative photosynthetic carbon pathway IEP Predict GO terms from Neighborhoods
BP GO:0010027 thylakoid membrane organization IEP Predict GO terms from Neighborhoods
BP GO:0010044 response to aluminum ion IEP Predict GO terms from Neighborhoods
BP GO:0010205 photoinhibition IEP Predict GO terms from Neighborhoods
BP GO:0010206 photosystem II repair IEP Predict GO terms from Neighborhoods
BP GO:0010207 photosystem II assembly IEP Predict GO terms from Neighborhoods
BP GO:0010217 cellular aluminum ion homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0010304 PSII associated light-harvesting complex II catabolic process IEP Predict GO terms from Neighborhoods
CC GO:0010598 NAD(P)H dehydrogenase complex (plastoquinone) IEP Predict GO terms from Neighborhoods
MF GO:0015035 protein-disulfide reductase activity IEP Predict GO terms from Neighborhoods
MF GO:0015036 disulfide oxidoreductase activity IEP Predict GO terms from Neighborhoods
MF GO:0015083 aluminum ion transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0015440 ABC-type peptide transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0016207 4-coumarate-CoA ligase activity IEP Predict GO terms from Neighborhoods
BP GO:0016311 dephosphorylation IEP Predict GO terms from Neighborhoods
MF GO:0016408 C-acyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0016618 hydroxypyruvate reductase activity IEP Predict GO terms from Neighborhoods
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predict GO terms from Neighborhoods
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Predict GO terms from Neighborhoods
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Predict GO terms from Neighborhoods
MF GO:0016668 oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor IEP Predict GO terms from Neighborhoods
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP Predict GO terms from Neighborhoods
MF GO:0016787 hydrolase activity IEP Predict GO terms from Neighborhoods
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predict GO terms from Neighborhoods
MF GO:0016791 phosphatase activity IEP Predict GO terms from Neighborhoods
MF GO:0016822 hydrolase activity, acting on acid carbon-carbon bonds IEP Predict GO terms from Neighborhoods
MF GO:0016823 hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances IEP Predict GO terms from Neighborhoods
MF GO:0016824 hydrolase activity, acting on acid halide bonds IEP Predict GO terms from Neighborhoods
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Predict GO terms from Neighborhoods
MF GO:0018786 haloalkane dehalogenase activity IEP Predict GO terms from Neighborhoods
BP GO:0018884 carbazole metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0019120 hydrolase activity, acting on acid halide bonds, in C-halide compounds IEP Predict GO terms from Neighborhoods
MF GO:0019203 carbohydrate phosphatase activity IEP Predict GO terms from Neighborhoods
MF GO:0019205 nucleobase-containing compound kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0019252 starch biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0019253 reductive pentose-phosphate cycle IEP Predict GO terms from Neighborhoods
BP GO:0019318 hexose metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019319 hexose biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0019430 removal of superoxide radicals IEP Predict GO terms from Neighborhoods
BP GO:0019637 organophosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019685 photosynthesis, dark reaction IEP Predict GO terms from Neighborhoods
CC GO:0019866 organelle inner membrane IEP Predict GO terms from Neighborhoods
BP GO:0019882 antigen processing and presentation IEP Predict GO terms from Neighborhoods
BP GO:0019883 antigen processing and presentation of endogenous antigen IEP Predict GO terms from Neighborhoods
BP GO:0019885 antigen processing and presentation of endogenous peptide antigen via MHC class I IEP Predict GO terms from Neighborhoods
BP GO:0022900 electron transport chain IEP Predict GO terms from Neighborhoods
BP GO:0030091 protein repair IEP Predict GO terms from Neighborhoods
MF GO:0030267 glyoxylate reductase (NADP+) activity IEP Predict GO terms from Neighborhoods
BP GO:0030388 fructose 1,6-bisphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0031154 culmination involved in sorocarp development IEP Predict GO terms from Neighborhoods
CC GO:0031234 extrinsic component of cytoplasmic side of plasma membrane IEP Predict GO terms from Neighborhoods
BP GO:0031288 sorocarp morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0031341 regulation of cell killing IEP Predict GO terms from Neighborhoods
CC GO:0031676 plasma membrane-derived thylakoid membrane IEP Predict GO terms from Neighborhoods
CC GO:0031969 chloroplast membrane IEP Predict GO terms from Neighborhoods
CC GO:0031977 thylakoid lumen IEP Predict GO terms from Neighborhoods
BP GO:0033614 chloroplast proton-transporting ATP synthase complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0034514 mitochondrial unfolded protein response IEP Predict GO terms from Neighborhoods
BP GO:0034620 cellular response to unfolded protein IEP Predict GO terms from Neighborhoods
CC GO:0034702 ion channel complex IEP Predict GO terms from Neighborhoods
CC GO:0034703 cation channel complex IEP Predict GO terms from Neighborhoods
CC GO:0034705 potassium channel complex IEP Predict GO terms from Neighborhoods
MF GO:0036094 small molecule binding IEP Predict GO terms from Neighborhoods
MF GO:0042132 fructose 1,6-bisphosphate 1-phosphatase activity IEP Predict GO terms from Neighborhoods
BP GO:0042180 cellular ketone metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042181 ketone biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0042287 MHC protein binding IEP Predict GO terms from Neighborhoods
BP GO:0042362 fat-soluble vitamin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0042371 vitamin K biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0042372 phylloquinone biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0042373 vitamin K metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042374 phylloquinone metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0042578 phosphoric ester hydrolase activity IEP Predict GO terms from Neighborhoods
CC GO:0042579 microbody IEP Predict GO terms from Neighborhoods
CC GO:0042597 periplasmic space IEP Predict GO terms from Neighborhoods
CC GO:0042717 plasma membrane-derived chromatophore membrane IEP Predict GO terms from Neighborhoods
CC GO:0042824 MHC class I peptide loading complex IEP Predict GO terms from Neighborhoods
BP GO:0043094 cellular metabolic compound salvage IEP Predict GO terms from Neighborhoods
BP GO:0043155 negative regulation of photosynthesis, light reaction IEP Predict GO terms from Neighborhoods
BP GO:0043461 proton-transporting ATP synthase complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0043933 protein-containing complex organization IEP Predict GO terms from Neighborhoods
BP GO:0044281 small molecule metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0044283 small molecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0045639 positive regulation of myeloid cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045646 regulation of erythrocyte differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045648 positive regulation of erythrocyte differentiation IEP Predict GO terms from Neighborhoods
BP GO:0046232 carbazole catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046351 disaccharide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0046364 monosaccharide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0046940 nucleoside monophosphate phosphorylation IEP Predict GO terms from Neighborhoods
MF GO:0046977 TAP binding IEP Predict GO terms from Neighborhoods
BP GO:0046984 regulation of hemoglobin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0046985 positive regulation of hemoglobin biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0047134 protein-disulfide reductase (NAD(P)) activity IEP Predict GO terms from Neighborhoods
MF GO:0047538 2-carboxy-D-arabinitol-1-phosphatase activity IEP Predict GO terms from Neighborhoods
BP GO:0048002 antigen processing and presentation of peptide antigen IEP Predict GO terms from Neighborhoods
BP GO:0048564 photosystem I assembly IEP Predict GO terms from Neighborhoods
BP GO:0048821 erythrocyte development IEP Predict GO terms from Neighborhoods
MF GO:0050145 nucleoside monophosphate kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0050278 sedoheptulose-bisphosphatase activity IEP Predict GO terms from Neighborhoods
MF GO:0050308 sugar-phosphatase activity IEP Predict GO terms from Neighborhoods
MF GO:0051536 iron-sulfur cluster binding IEP Predict GO terms from Neighborhoods
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Predict GO terms from Neighborhoods
MF GO:0051540 metal cluster binding IEP Predict GO terms from Neighborhoods
BP GO:0051703 biological process involved in intraspecies interaction between organisms IEP Predict GO terms from Neighborhoods
BP GO:0055079 aluminum ion homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0061515 myeloid cell development IEP Predict GO terms from Neighborhoods
BP GO:0061635 regulation of protein complex stability IEP Predict GO terms from Neighborhoods
CC GO:0062157 mitochondrial ATP-gated potassium channel complex IEP Predict GO terms from Neighborhoods
BP GO:0065003 protein-containing complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0070071 proton-transporting two-sector ATPase complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0071369 cellular response to ethylene stimulus IEP Predict GO terms from Neighborhoods
BP GO:0072523 purine-containing compound catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0072593 reactive oxygen species metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0097009 energy homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0097428 protein maturation by iron-sulfur cluster transfer IEP Predict GO terms from Neighborhoods
MF GO:0097573 glutathione oxidoreductase activity IEP Predict GO terms from Neighborhoods
BP GO:0098586 cellular response to virus IEP Predict GO terms from Neighborhoods
CC GO:0098796 membrane protein complex IEP Predict GO terms from Neighborhoods
BP GO:0099120 socially cooperative development IEP Predict GO terms from Neighborhoods
MF GO:0106290 trans-cinnamate-CoA ligase activity IEP Predict GO terms from Neighborhoods
MF GO:0106345 glyoxylate reductase activity IEP Predict GO terms from Neighborhoods
MF GO:1901265 nucleoside phosphate binding IEP Predict GO terms from Neighborhoods
BP GO:1901661 quinone metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901663 quinone biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1902602 aluminum ion transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:1905156 negative regulation of photosynthesis IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR036812 NADP_OxRdtase_dom_sf 24 325
IPR011598 bHLH_dom 671 717
IPR036638 HLH_DNA-bd_sf 670 744
IPR023210 NADP_OxRdtase_dom 35 324
No external refs found!